miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 97218 0.67 0.811853
Target:  5'- cCACGcucggagGCGC-UGG-CGCCGGCCcGGCc -3'
miRNA:   3'- -GUGCa------UGUGuAUCaGCGGCCGG-CCGu -5'
23769 5' -56.7 NC_005261.1 + 97140 0.67 0.811853
Target:  5'- cCACGcucggagGCGC-UGG-CGCCGGCCcGGCc -3'
miRNA:   3'- -GUGCa------UGUGuAUCaGCGGCCGG-CCGu -5'
23769 5' -56.7 NC_005261.1 + 1479 0.67 0.811853
Target:  5'- gCGCGgccGCGCAgaAGgccacCGCCgcGGCCGGCAg -3'
miRNA:   3'- -GUGCa--UGUGUa-UCa----GCGG--CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 3846 0.67 0.803015
Target:  5'- gGCGgcagcgGCGCcgGcGcCGCgCGGCCGGCGa -3'
miRNA:   3'- gUGCa-----UGUGuaU-CaGCG-GCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 55647 0.67 0.803015
Target:  5'- aACGcGCGCAgaaAGUCGCCGcGCaaaaagCGGCGa -3'
miRNA:   3'- gUGCaUGUGUa--UCAGCGGC-CG------GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 75517 0.67 0.803015
Target:  5'- gGCGcACGCcGUGGUCGCCGcGCugcagCGGCu -3'
miRNA:   3'- gUGCaUGUG-UAUCAGCGGC-CG-----GCCGu -5'
23769 5' -56.7 NC_005261.1 + 94348 0.67 0.803015
Target:  5'- gGCGUcgaucguccgGCACAcAG-CGCaCGGCCGGUc -3'
miRNA:   3'- gUGCA----------UGUGUaUCaGCG-GCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 76421 0.67 0.803015
Target:  5'- gCGCGUGCAgAg---CGCCGGCgccaUGGCGg -3'
miRNA:   3'- -GUGCAUGUgUaucaGCGGCCG----GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 59268 0.67 0.794022
Target:  5'- aCGCGUcGCACGgcguGUCGCCGcCCaGCAg -3'
miRNA:   3'- -GUGCA-UGUGUau--CAGCGGCcGGcCGU- -5'
23769 5' -56.7 NC_005261.1 + 3376 0.67 0.794022
Target:  5'- cCGCGaGCGCGgccgccaGCCGcGCCGGCAc -3'
miRNA:   3'- -GUGCaUGUGUaucag--CGGC-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 125930 0.67 0.794022
Target:  5'- cCACGcGCACgGUAGcCGCUGGCgcggggucgcaCGGCAg -3'
miRNA:   3'- -GUGCaUGUG-UAUCaGCGGCCG-----------GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 100817 0.67 0.794022
Target:  5'- gCGCGUGCGCcUGcGcCGCCcaGGCCGGgAg -3'
miRNA:   3'- -GUGCAUGUGuAU-CaGCGG--CCGGCCgU- -5'
23769 5' -56.7 NC_005261.1 + 64300 0.67 0.794022
Target:  5'- aGCGUGCGCAUGuuucgcGUCG-CGGCCGuaGc -3'
miRNA:   3'- gUGCAUGUGUAU------CAGCgGCCGGCcgU- -5'
23769 5' -56.7 NC_005261.1 + 34924 0.67 0.794022
Target:  5'- gCGCGgcCACGcGGggGgCGGCCGGCGc -3'
miRNA:   3'- -GUGCauGUGUaUCagCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 14223 0.67 0.794022
Target:  5'- aACGcGCGCGgugaAGaccgCGCCGGCCGGg- -3'
miRNA:   3'- gUGCaUGUGUa---UCa---GCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 121768 0.68 0.784882
Target:  5'- -cCGaGCGCGguggGGUgGCCgcGGCCGGCGg -3'
miRNA:   3'- guGCaUGUGUa---UCAgCGG--CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 109332 0.68 0.784882
Target:  5'- gCGCGgcCGCGgGGUCGgCGGCCGcGUc -3'
miRNA:   3'- -GUGCauGUGUaUCAGCgGCCGGC-CGu -5'
23769 5' -56.7 NC_005261.1 + 118927 0.68 0.775605
Target:  5'- cCGCGgGCGCGgcGcCGCgCGGCUGGCc -3'
miRNA:   3'- -GUGCaUGUGUauCaGCG-GCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 98843 0.68 0.775605
Target:  5'- gGCGUACAgcgGGUCGCCGcuugcGgCGGCGa -3'
miRNA:   3'- gUGCAUGUguaUCAGCGGC-----CgGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 19084 0.68 0.77467
Target:  5'- gCGCGUGCuugcgugGCGUuggaaguugcgGGUCaGCCGGUCGGUg -3'
miRNA:   3'- -GUGCAUG-------UGUA-----------UCAG-CGGCCGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.