miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 1479 0.67 0.811853
Target:  5'- gCGCGgccGCGCAgaAGgccacCGCCgcGGCCGGCAg -3'
miRNA:   3'- -GUGCa--UGUGUa-UCa----GCGG--CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 3376 0.67 0.794022
Target:  5'- cCGCGaGCGCGgccgccaGCCGcGCCGGCAc -3'
miRNA:   3'- -GUGCaUGUGUaucag--CGGC-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 3446 0.67 0.829029
Target:  5'- gGCGgGCGCGcgGGcCGCCGcGCCGcGCGu -3'
miRNA:   3'- gUGCaUGUGUa-UCaGCGGC-CGGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 3655 0.68 0.756673
Target:  5'- gCGCGUcuggaGCGCA-GGcCG-CGGCCGGCAg -3'
miRNA:   3'- -GUGCA-----UGUGUaUCaGCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 3846 0.67 0.803015
Target:  5'- gGCGgcagcgGCGCcgGcGcCGCgCGGCCGGCGa -3'
miRNA:   3'- gUGCa-----UGUGuaU-CaGCG-GCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 5889 0.66 0.86117
Target:  5'- gCugGcucgGCugGcUAGcUCgGCCGGCCGGCu -3'
miRNA:   3'- -GugCa---UGugU-AUC-AG-CGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 10442 0.66 0.864209
Target:  5'- aCGCGUGCugGgAGgcgcugcugcagcucUCGCCcgagcaGGCCGGCc -3'
miRNA:   3'- -GUGCAUGugUaUC---------------AGCGG------CCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 12309 0.7 0.624091
Target:  5'- gCACGgGCGCGUAGccggcgggcgcgCGCuUGGCCGGCGc -3'
miRNA:   3'- -GUGCaUGUGUAUCa-----------GCG-GCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 13498 0.86 0.085697
Target:  5'- gACGaGCGCGcAGUCGCCGGCCGGCc -3'
miRNA:   3'- gUGCaUGUGUaUCAGCGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 14223 0.67 0.794022
Target:  5'- aACGcGCGCGgugaAGaccgCGCCGGCCGGg- -3'
miRNA:   3'- gUGCaUGUGUa---UCa---GCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 14976 0.68 0.766199
Target:  5'- gGCGacUGCGCGgccgCGCCGGCCGcGCc -3'
miRNA:   3'- gUGC--AUGUGUaucaGCGGCCGGC-CGu -5'
23769 5' -56.7 NC_005261.1 + 15208 0.7 0.677274
Target:  5'- uCGCGcGguCGUAGaggcUCGCCGaGCCGGCGu -3'
miRNA:   3'- -GUGCaUguGUAUC----AGCGGC-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 15768 0.74 0.448899
Target:  5'- cCGCGaUACACAaGGcCGCUGGCgGGCGc -3'
miRNA:   3'- -GUGC-AUGUGUaUCaGCGGCCGgCCGU- -5'
23769 5' -56.7 NC_005261.1 + 17842 0.68 0.747037
Target:  5'- gGCGUucCGCAgGGcCucguaagagcgGCCGGCCGGCAg -3'
miRNA:   3'- gUGCAu-GUGUaUCaG-----------CGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 19084 0.68 0.77467
Target:  5'- gCGCGUGCuugcgugGCGUuggaaguugcgGGUCaGCCGGUCGGUg -3'
miRNA:   3'- -GUGCAUG-------UGUA-----------UCAG-CGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 21406 0.7 0.677274
Target:  5'- uGCGUuccCGCGccG-CGCCGGCCGGUg -3'
miRNA:   3'- gUGCAu--GUGUauCaGCGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 21784 0.67 0.829029
Target:  5'- cCGCG-GCGCGggccgccgcAGcCGCCGGCCGGg- -3'
miRNA:   3'- -GUGCaUGUGUa--------UCaGCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 25034 0.76 0.347209
Target:  5'- aGCGUucuCACGUGGUCGCgGGCCccaaaaaccuGGCAc -3'
miRNA:   3'- gUGCAu--GUGUAUCAGCGgCCGG----------CCGU- -5'
23769 5' -56.7 NC_005261.1 + 25187 0.66 0.876023
Target:  5'- uCACGUGgGCcUGGgccUCGCUgcgauuGGCCGGCc -3'
miRNA:   3'- -GUGCAUgUGuAUC---AGCGG------CCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 29774 0.66 0.848688
Target:  5'- gCGCGUACGCGcccauggccuacccGGagGCCGGCgcCGGCGg -3'
miRNA:   3'- -GUGCAUGUGUa-------------UCagCGGCCG--GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.