miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 29846 0.7 0.626141
Target:  5'- uGCGcGC-CGUGcUCGCCGGCCGcGCGg -3'
miRNA:   3'- gUGCaUGuGUAUcAGCGGCCGGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 31394 0.67 0.817942
Target:  5'- gACGUGCGCGUGGUggugcucuacgaccCGCUGcccggggaggcGCUGGCGg -3'
miRNA:   3'- gUGCAUGUGUAUCA--------------GCGGC-----------CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 33588 0.66 0.86117
Target:  5'- cCGCGaGCACcagGGgcggCGCCGGCgcgggCGGCGg -3'
miRNA:   3'- -GUGCaUGUGua-UCa---GCGGCCG-----GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 34924 0.67 0.794022
Target:  5'- gCGCGgcCACGcGGggGgCGGCCGGCGc -3'
miRNA:   3'- -GUGCauGUGUaUCagCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 36786 0.77 0.282443
Target:  5'- uGCGuUGCGCcgAGacuuugCGCCGGCCGGCGc -3'
miRNA:   3'- gUGC-AUGUGuaUCa-----GCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 38283 0.66 0.876023
Target:  5'- gCugGUGCACGcGGU-GCUGGCCcGCc -3'
miRNA:   3'- -GugCAUGUGUaUCAgCGGCCGGcCGu -5'
23769 5' -56.7 NC_005261.1 + 40673 0.66 0.876023
Target:  5'- cCGCG-ACGCcgucgGGgagccggCGCCGGCCGGg- -3'
miRNA:   3'- -GUGCaUGUGua---UCa------GCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 42812 0.7 0.667087
Target:  5'- gACGUcCGCGgccgCGCCGGCCGGa- -3'
miRNA:   3'- gUGCAuGUGUaucaGCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 43174 0.67 0.829029
Target:  5'- gCGCG-AUACGgcGcCGCCGGCgaGGCAg -3'
miRNA:   3'- -GUGCaUGUGUauCaGCGGCCGg-CCGU- -5'
23769 5' -56.7 NC_005261.1 + 45545 0.66 0.866465
Target:  5'- gCAC-UACGCu--GUUGCCcggcugcugcuggcGGCCGGCAa -3'
miRNA:   3'- -GUGcAUGUGuauCAGCGG--------------CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 46648 0.66 0.859639
Target:  5'- gUACGUGCACAcGGcgaaguuccgcgCGuuGGCCGcGCGc -3'
miRNA:   3'- -GUGCAUGUGUaUCa-----------GCggCCGGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 47121 0.76 0.324497
Target:  5'- gACGUGCGCGUccaGGUCGUCGcgcacagcGCCGGCGu -3'
miRNA:   3'- gUGCAUGUGUA---UCAGCGGC--------CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 47999 0.69 0.687423
Target:  5'- gGCGU-CGCAgccgccGUCGCCccGCCGGCAg -3'
miRNA:   3'- gUGCAuGUGUau----CAGCGGc-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 48442 0.67 0.829029
Target:  5'- uCGCGgu-GCGUGG-CG-CGGCCGGCGc -3'
miRNA:   3'- -GUGCaugUGUAUCaGCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 48747 0.7 0.677274
Target:  5'- gCAC-UGCGCGUAGUCGCgcccccCGGgCGGCc -3'
miRNA:   3'- -GUGcAUGUGUAUCAGCG------GCCgGCCGu -5'
23769 5' -56.7 NC_005261.1 + 50373 0.7 0.667087
Target:  5'- uCACGUagcuccGCGCGUcgaaguacGUCGCgaaGGCCGGCAg -3'
miRNA:   3'- -GUGCA------UGUGUAu-------CAGCGg--CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 50441 0.75 0.387529
Target:  5'- aGCGUGCGCGUGaa-GCUGcGCCGGCAg -3'
miRNA:   3'- gUGCAUGUGUAUcagCGGC-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 53561 0.7 0.677274
Target:  5'- cCGCGgcccagGCGCAcUAGcggcCGCgGGCCGGCGg -3'
miRNA:   3'- -GUGCa-----UGUGU-AUCa---GCGgCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 55010 0.68 0.747037
Target:  5'- -uCGUGCACAacgacgcucccgUAGcCGCCGGCCccgcGCAg -3'
miRNA:   3'- guGCAUGUGU------------AUCaGCGGCCGGc---CGU- -5'
23769 5' -56.7 NC_005261.1 + 55150 0.71 0.615895
Target:  5'- gAUGUGCGCGcgcgAG-CGCCGccGCCGGCGg -3'
miRNA:   3'- gUGCAUGUGUa---UCaGCGGC--CGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.