miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 55410 0.68 0.756673
Target:  5'- gCAUcUACGCGcg--CGCCGGCUGGCGc -3'
miRNA:   3'- -GUGcAUGUGUaucaGCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 55647 0.67 0.803015
Target:  5'- aACGcGCGCAgaaAGUCGCCGcGCaaaaagCGGCGa -3'
miRNA:   3'- gUGCaUGUGUa--UCAGCGGC-CG------GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 56527 0.69 0.727471
Target:  5'- cCGCGUucguCGCGcGGUUcaGCCGGCUGGUg -3'
miRNA:   3'- -GUGCAu---GUGUaUCAG--CGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 57657 0.66 0.876023
Target:  5'- gCACGcccccgagacUGCGCG-AG-CGCCaGCCGGCGg -3'
miRNA:   3'- -GUGC----------AUGUGUaUCaGCGGcCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 57849 0.67 0.821385
Target:  5'- gCGCGggcggcaaggccucgGCGCucgGGUCgggaaGUCGGCCGGCAc -3'
miRNA:   3'- -GUGCa--------------UGUGua-UCAG-----CGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 58450 0.72 0.515266
Target:  5'- aCGCGUACGCGUAcgacUCGCCGGgCGcGUAu -3'
miRNA:   3'- -GUGCAUGUGUAUc---AGCGGCCgGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 59268 0.67 0.794022
Target:  5'- aCGCGUcGCACGgcguGUCGCCGcCCaGCAg -3'
miRNA:   3'- -GUGCA-UGUGUau--CAGCGGCcGGcCGU- -5'
23769 5' -56.7 NC_005261.1 + 59416 0.7 0.63639
Target:  5'- gGCGccgGCGCu--GUCGCgCGGCCcGGCAg -3'
miRNA:   3'- gUGCa--UGUGuauCAGCG-GCCGG-CCGU- -5'
23769 5' -56.7 NC_005261.1 + 59457 0.66 0.845488
Target:  5'- gCGCGgcCGCGgcgucgggGGgcagCGCCGGCgCGGCc -3'
miRNA:   3'- -GUGCauGUGUa-------UCa---GCGGCCG-GCCGu -5'
23769 5' -56.7 NC_005261.1 + 60390 0.69 0.697527
Target:  5'- gAgGUGCGCcuccAUGG-CGCCgGGCCGGCc -3'
miRNA:   3'- gUgCAUGUG----UAUCaGCGG-CCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 63734 0.71 0.575111
Target:  5'- gGCGUGCGCAUGGcCGCggCGGCguaGGCc -3'
miRNA:   3'- gUGCAUGUGUAUCaGCG--GCCGg--CCGu -5'
23769 5' -56.7 NC_005261.1 + 64169 0.7 0.63639
Target:  5'- uCGCGUGCAgGUGGUC-CgGGCaGGCGa -3'
miRNA:   3'- -GUGCAUGUgUAUCAGcGgCCGgCCGU- -5'
23769 5' -56.7 NC_005261.1 + 64300 0.67 0.794022
Target:  5'- aGCGUGCGCAUGuuucgcGUCG-CGGCCGuaGc -3'
miRNA:   3'- gUGCAUGUGUAU------CAGCgGCCGGCcgU- -5'
23769 5' -56.7 NC_005261.1 + 66030 0.66 0.876023
Target:  5'- gCGCGU---CGUAGUCGgCGGCCacGGCc -3'
miRNA:   3'- -GUGCAuguGUAUCAGCgGCCGG--CCGu -5'
23769 5' -56.7 NC_005261.1 + 67635 0.66 0.87385
Target:  5'- cCACGUACGCcgAGaaCGCgGGCCgcccguccgcgcgcGGCGc -3'
miRNA:   3'- -GUGCAUGUGuaUCa-GCGgCCGG--------------CCGU- -5'
23769 5' -56.7 NC_005261.1 + 68679 0.66 0.868703
Target:  5'- gGCGUccgcCGCGUGGggGCCGGCgCGGaCGa -3'
miRNA:   3'- gUGCAu---GUGUAUCagCGGCCG-GCC-GU- -5'
23769 5' -56.7 NC_005261.1 + 69493 0.7 0.677274
Target:  5'- gCugGUGCACcu-GUaCGCCGG-CGGCGg -3'
miRNA:   3'- -GugCAUGUGuauCA-GCGGCCgGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 70843 0.67 0.839813
Target:  5'- gCGCGUACGCcUccucagguccagggcGGcCGCCguggcguGGCCGGCGg -3'
miRNA:   3'- -GUGCAUGUGuA---------------UCaGCGG-------CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 71987 0.68 0.747037
Target:  5'- gCAgGUGCGCAgcGUCGCCccuGGCCuuaacgccgggGGCGa -3'
miRNA:   3'- -GUgCAUGUGUauCAGCGG---CCGG-----------CCGU- -5'
23769 5' -56.7 NC_005261.1 + 72207 0.76 0.331943
Target:  5'- gCGCGgcagaaagaACAUGGUguccCGCCGGCCGGCGg -3'
miRNA:   3'- -GUGCaug------UGUAUCA----GCGGCCGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.