miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 134200 0.78 0.250793
Target:  5'- gCGCGgcucgGCGCGcgGGUCGCggCGGCCGGCAg -3'
miRNA:   3'- -GUGCa----UGUGUa-UCAGCG--GCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 133839 0.74 0.439801
Target:  5'- cCGCGUGCGCGccGUgGCCGGCgCGcGCGa -3'
miRNA:   3'- -GUGCAUGUGUauCAgCGGCCG-GC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 133129 0.66 0.871657
Target:  5'- gGCGUGCGCGUcucccugcggugcgcGcUCGCCGccGUCGGCGu -3'
miRNA:   3'- gUGCAUGUGUA---------------UcAGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 131746 0.7 0.626141
Target:  5'- gCACGcGgACGgca-CGCCGGCCGGCGc -3'
miRNA:   3'- -GUGCaUgUGUaucaGCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 131195 0.7 0.646637
Target:  5'- cCGCG-GCGC--GGUCGCC-GCCGGCGc -3'
miRNA:   3'- -GUGCaUGUGuaUCAGCGGcCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 131092 0.7 0.677274
Target:  5'- cCACGUACGCc--GUCGCCGcGCCGc-- -3'
miRNA:   3'- -GUGCAUGUGuauCAGCGGC-CGGCcgu -5'
23769 5' -56.7 NC_005261.1 + 130901 0.71 0.564999
Target:  5'- cCACGaGCACAagacGGUCGCCGcuuaCCGGCGg -3'
miRNA:   3'- -GUGCaUGUGUa---UCAGCGGCc---GGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 127287 0.66 0.868703
Target:  5'- cCGCGgGgGCAgcccucccCGCCGGCUGGCGg -3'
miRNA:   3'- -GUGCaUgUGUauca----GCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 126821 0.7 0.646637
Target:  5'- uGCGUACAgGUcugCGuuGGUCGGCAg -3'
miRNA:   3'- gUGCAUGUgUAucaGCggCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 125930 0.67 0.794022
Target:  5'- cCACGcGCACgGUAGcCGCUGGCgcggggucgcaCGGCAg -3'
miRNA:   3'- -GUGCaUGUG-UAUCaGCGGCCG-----------GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 124089 0.68 0.756673
Target:  5'- gGCGccCGCGUAGcgcgCGCacagGGCCGGCAc -3'
miRNA:   3'- gUGCauGUGUAUCa---GCGg---CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 121768 0.68 0.784882
Target:  5'- -cCGaGCGCGguggGGUgGCCgcGGCCGGCGg -3'
miRNA:   3'- guGCaUGUGUa---UCAgCGG--CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 121229 0.66 0.86117
Target:  5'- aGCac-CGCAUGG-CGCCGGCCaGCu -3'
miRNA:   3'- gUGcauGUGUAUCaGCGGCCGGcCGu -5'
23769 5' -56.7 NC_005261.1 + 118927 0.68 0.775605
Target:  5'- cCGCGgGCGCGgcGcCGCgCGGCUGGCc -3'
miRNA:   3'- -GUGCaUGUGUauCaGCG-GCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 118807 0.67 0.837353
Target:  5'- gCACGUGgGCGUcugCGCCcugGGCgCGGCAc -3'
miRNA:   3'- -GUGCAUgUGUAucaGCGG---CCG-GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 110930 0.68 0.756673
Target:  5'- cCGCGcuggGCACcgAG-CGCCGcCCGGCGg -3'
miRNA:   3'- -GUGCa---UGUGuaUCaGCGGCcGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 109473 0.66 0.868703
Target:  5'- gCGCGUGCGCGcccgAG-CGCaaauGGCCGGg- -3'
miRNA:   3'- -GUGCAUGUGUa---UCaGCGg---CCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 109332 0.68 0.784882
Target:  5'- gCGCGgcCGCGgGGUCGgCGGCCGcGUc -3'
miRNA:   3'- -GUGCauGUGUaUCAGCgGCCGGC-CGu -5'
23769 5' -56.7 NC_005261.1 + 109202 0.68 0.7373
Target:  5'- gGCGUGCGCAggcgcUCGuaGGCgCGGCAc -3'
miRNA:   3'- gUGCAUGUGUauc--AGCggCCG-GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 108425 0.72 0.515266
Target:  5'- uGCGUGCACGgcaaccgcGUC-CCGGCCGaGCAg -3'
miRNA:   3'- gUGCAUGUGUau------CAGcGGCCGGC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.