miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 106105 0.67 0.837353
Target:  5'- gACGUcgGC-CGgcGUCGCCGGCgcgcgcgcgcCGGCAa -3'
miRNA:   3'- gUGCA--UGuGUauCAGCGGCCG----------GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 105123 0.67 0.811853
Target:  5'- gCGCGgGCGCG-GGcCGCCGGCgCGcGCAg -3'
miRNA:   3'- -GUGCaUGUGUaUCaGCGGCCG-GC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 100817 0.67 0.794022
Target:  5'- gCGCGUGCGCcUGcGcCGCCcaGGCCGGgAg -3'
miRNA:   3'- -GUGCAUGUGuAU-CaGCGG--CCGGCCgU- -5'
23769 5' -56.7 NC_005261.1 + 98843 0.68 0.775605
Target:  5'- gGCGUACAgcgGGUCGCCGcuugcGgCGGCGa -3'
miRNA:   3'- gUGCAUGUguaUCAGCGGC-----CgGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 98795 0.77 0.30998
Target:  5'- gCGCGUGCGaaacgGGUCGCCGG-CGGCGu -3'
miRNA:   3'- -GUGCAUGUgua--UCAGCGGCCgGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 98515 0.67 0.811853
Target:  5'- gGCGUACGgGcAGgcgCGagauCCGGCCGGUAg -3'
miRNA:   3'- gUGCAUGUgUaUCa--GC----GGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 97218 0.67 0.811853
Target:  5'- cCACGcucggagGCGC-UGG-CGCCGGCCcGGCc -3'
miRNA:   3'- -GUGCa------UGUGuAUCaGCGGCCGG-CCGu -5'
23769 5' -56.7 NC_005261.1 + 97140 0.67 0.811853
Target:  5'- cCACGcucggagGCGC-UGG-CGCCGGCCcGGCc -3'
miRNA:   3'- -GUGCa------UGUGuAUCaGCGGCCGG-CCGu -5'
23769 5' -56.7 NC_005261.1 + 94606 0.67 0.820527
Target:  5'- cCACGaGCGCGcgcccUCGCCGccGCCGGCGc -3'
miRNA:   3'- -GUGCaUGUGUauc--AGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 94348 0.67 0.803015
Target:  5'- gGCGUcgaucguccgGCACAcAG-CGCaCGGCCGGUc -3'
miRNA:   3'- gUGCA----------UGUGUaUCaGCG-GCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 93655 0.66 0.86117
Target:  5'- cCGCGUACGCccaccGGUcCGCgGGCggCGGCGc -3'
miRNA:   3'- -GUGCAUGUGua---UCA-GCGgCCG--GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 90376 0.66 0.85343
Target:  5'- -uCGUGCGCGgcgAGgcccCGCCGGCgGGg- -3'
miRNA:   3'- guGCAUGUGUa--UCa---GCGGCCGgCCgu -5'
23769 5' -56.7 NC_005261.1 + 88825 0.67 0.811853
Target:  5'- gGCGgcgGCGCg----CGCCGGCCcGGCGu -3'
miRNA:   3'- gUGCa--UGUGuaucaGCGGCCGG-CCGU- -5'
23769 5' -56.7 NC_005261.1 + 87750 0.68 0.7373
Target:  5'- gACGUACACGaAGccCGCgGGCCcuGGCGc -3'
miRNA:   3'- gUGCAUGUGUaUCa-GCGgCCGG--CCGU- -5'
23769 5' -56.7 NC_005261.1 + 85010 0.69 0.727471
Target:  5'- gACGgcCGCGgGGUCGCgCGGCCGccGCGc -3'
miRNA:   3'- gUGCauGUGUaUCAGCG-GCCGGC--CGU- -5'
23769 5' -56.7 NC_005261.1 + 84130 0.67 0.829029
Target:  5'- aGCGg--GCGgGGUCGCUGGCgGGCc -3'
miRNA:   3'- gUGCaugUGUaUCAGCGGCCGgCCGu -5'
23769 5' -56.7 NC_005261.1 + 84048 0.66 0.871657
Target:  5'- aAUGUGCGCAgaaaUGGUCuuuuuauuuuuuguuGCCGGCaCGcGCAu -3'
miRNA:   3'- gUGCAUGUGU----AUCAG---------------CGGCCG-GC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 83219 0.73 0.495862
Target:  5'- gCAgGUGCACAgcgccAGUCGCCGGCCcacGGa- -3'
miRNA:   3'- -GUgCAUGUGUa----UCAGCGGCCGG---CCgu -5'
23769 5' -56.7 NC_005261.1 + 83004 0.67 0.820527
Target:  5'- -uCGcGCACcgAGcCGCCGucGCCGGCGc -3'
miRNA:   3'- guGCaUGUGuaUCaGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 82048 0.67 0.811853
Target:  5'- uGCGUcaGCGCGggccacGUCGCCGGgucgaCGGCGu -3'
miRNA:   3'- gUGCA--UGUGUau----CAGCGGCCg----GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.