miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 66030 0.66 0.876023
Target:  5'- gCGCGU---CGUAGUCGgCGGCCacGGCc -3'
miRNA:   3'- -GUGCAuguGUAUCAGCgGCCGG--CCGu -5'
23769 5' -56.7 NC_005261.1 + 58450 0.72 0.515266
Target:  5'- aCGCGUACGCGUAcgacUCGCCGGgCGcGUAu -3'
miRNA:   3'- -GUGCAUGUGUAUc---AGCGGCCgGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 77376 0.72 0.554934
Target:  5'- gCGCGUcuccgGCGCAcccccUGCCGGCCGGCGa -3'
miRNA:   3'- -GUGCA-----UGUGUauca-GCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 130901 0.71 0.564999
Target:  5'- cCACGaGCACAagacGGUCGCCGcuuaCCGGCGg -3'
miRNA:   3'- -GUGCaUGUGUa---UCAGCGGCc---GGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 63734 0.71 0.575111
Target:  5'- gGCGUGCGCAUGGcCGCggCGGCguaGGCc -3'
miRNA:   3'- gUGCAUGUGUAUCaGCG--GCCGg--CCGu -5'
23769 5' -56.7 NC_005261.1 + 55150 0.71 0.615895
Target:  5'- gAUGUGCGCGcgcgAG-CGCCGccGCCGGCGg -3'
miRNA:   3'- gUGCAUGUGUa---UCaGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 12309 0.7 0.624091
Target:  5'- gCACGgGCGCGUAGccggcgggcgcgCGCuUGGCCGGCGc -3'
miRNA:   3'- -GUGCaUGUGUAUCa-----------GCG-GCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 131746 0.7 0.626141
Target:  5'- gCACGcGgACGgca-CGCCGGCCGGCGc -3'
miRNA:   3'- -GUGCaUgUGUaucaGCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 29846 0.7 0.626141
Target:  5'- uGCGcGC-CGUGcUCGCCGGCCGcGCGg -3'
miRNA:   3'- gUGCaUGuGUAUcAGCGGCCGGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 108425 0.72 0.515266
Target:  5'- uGCGUGCACGgcaaccgcGUC-CCGGCCGaGCAg -3'
miRNA:   3'- gUGCAUGUGUau------CAGcGGCCGGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 83219 0.73 0.495862
Target:  5'- gCAgGUGCACAgcgccAGUCGCCGGCCcacGGa- -3'
miRNA:   3'- -GUgCAUGUGUa----UCAGCGGCCGG---CCgu -5'
23769 5' -56.7 NC_005261.1 + 15768 0.74 0.448899
Target:  5'- cCGCGaUACACAaGGcCGCUGGCgGGCGc -3'
miRNA:   3'- -GUGC-AUGUGUaUCaGCGGCCGgCCGU- -5'
23769 5' -56.7 NC_005261.1 + 134200 0.78 0.250793
Target:  5'- gCGCGgcucgGCGCGcgGGUCGCggCGGCCGGCAg -3'
miRNA:   3'- -GUGCa----UGUGUa-UCAGCG--GCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 36786 0.77 0.282443
Target:  5'- uGCGuUGCGCcgAGacuuugCGCCGGCCGGCGc -3'
miRNA:   3'- gUGC-AUGUGuaUCa-----GCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 98795 0.77 0.30998
Target:  5'- gCGCGUGCGaaacgGGUCGCCGG-CGGCGu -3'
miRNA:   3'- -GUGCAUGUgua--UCAGCGGCCgGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 47121 0.76 0.324497
Target:  5'- gACGUGCGCGUccaGGUCGUCGcgcacagcGCCGGCGu -3'
miRNA:   3'- gUGCAUGUGUA---UCAGCGGC--------CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 72207 0.76 0.331943
Target:  5'- gCGCGgcagaaagaACAUGGUguccCGCCGGCCGGCGg -3'
miRNA:   3'- -GUGCaug------UGUAUCA----GCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 25034 0.76 0.347209
Target:  5'- aGCGUucuCACGUGGUCGCgGGCCccaaaaaccuGGCAc -3'
miRNA:   3'- gUGCAu--GUGUAUCAGCGgCCGG----------CCGU- -5'
23769 5' -56.7 NC_005261.1 + 50441 0.75 0.387529
Target:  5'- aGCGUGCGCGUGaa-GCUGcGCCGGCAg -3'
miRNA:   3'- gUGCAUGUGUAUcagCGGC-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 133839 0.74 0.439801
Target:  5'- cCGCGUGCGCGccGUgGCCGGCgCGcGCGa -3'
miRNA:   3'- -GUGCAUGUGUauCAgCGGCCG-GC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.