Results 41 - 60 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23769 | 5' | -56.7 | NC_005261.1 | + | 72207 | 0.76 | 0.331943 |
Target: 5'- gCGCGgcagaaagaACAUGGUguccCGCCGGCCGGCGg -3' miRNA: 3'- -GUGCaug------UGUAUCA----GCGGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 47121 | 0.76 | 0.324497 |
Target: 5'- gACGUGCGCGUccaGGUCGUCGcgcacagcGCCGGCGu -3' miRNA: 3'- gUGCAUGUGUA---UCAGCGGC--------CGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 98795 | 0.77 | 0.30998 |
Target: 5'- gCGCGUGCGaaacgGGUCGCCGG-CGGCGu -3' miRNA: 3'- -GUGCAUGUgua--UCAGCGGCCgGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 36786 | 0.77 | 0.282443 |
Target: 5'- uGCGuUGCGCcgAGacuuugCGCCGGCCGGCGc -3' miRNA: 3'- gUGC-AUGUGuaUCa-----GCGGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 134200 | 0.78 | 0.250793 |
Target: 5'- gCGCGgcucgGCGCGcgGGUCGCggCGGCCGGCAg -3' miRNA: 3'- -GUGCa----UGUGUa-UCAGCG--GCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 130901 | 0.71 | 0.564999 |
Target: 5'- cCACGaGCACAagacGGUCGCCGcuuaCCGGCGg -3' miRNA: 3'- -GUGCaUGUGUa---UCAGCGGCc---GGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 63734 | 0.71 | 0.575111 |
Target: 5'- gGCGUGCGCAUGGcCGCggCGGCguaGGCc -3' miRNA: 3'- gUGCAUGUGUAUCaGCG--GCCGg--CCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 69493 | 0.7 | 0.677274 |
Target: 5'- gCugGUGCACcu-GUaCGCCGG-CGGCGg -3' miRNA: 3'- -GugCAUGUGuauCA-GCGGCCgGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 21406 | 0.7 | 0.677274 |
Target: 5'- uGCGUuccCGCGccG-CGCCGGCCGGUg -3' miRNA: 3'- gUGCAu--GUGUauCaGCGGCCGGCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 48747 | 0.7 | 0.677274 |
Target: 5'- gCAC-UGCGCGUAGUCGCgcccccCGGgCGGCc -3' miRNA: 3'- -GUGcAUGUGUAUCAGCG------GCCgGCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 42812 | 0.7 | 0.667087 |
Target: 5'- gACGUcCGCGgccgCGCCGGCCGGa- -3' miRNA: 3'- gUGCAuGUGUaucaGCGGCCGGCCgu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 50373 | 0.7 | 0.667087 |
Target: 5'- uCACGUagcuccGCGCGUcgaaguacGUCGCgaaGGCCGGCAg -3' miRNA: 3'- -GUGCA------UGUGUAu-------CAGCGg--CCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 131195 | 0.7 | 0.646637 |
Target: 5'- cCGCG-GCGC--GGUCGCC-GCCGGCGc -3' miRNA: 3'- -GUGCaUGUGuaUCAGCGGcCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 126821 | 0.7 | 0.646637 |
Target: 5'- uGCGUACAgGUcugCGuuGGUCGGCAg -3' miRNA: 3'- gUGCAUGUgUAucaGCggCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 59416 | 0.7 | 0.63639 |
Target: 5'- gGCGccgGCGCu--GUCGCgCGGCCcGGCAg -3' miRNA: 3'- gUGCa--UGUGuauCAGCG-GCCGG-CCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 64169 | 0.7 | 0.63639 |
Target: 5'- uCGCGUGCAgGUGGUC-CgGGCaGGCGa -3' miRNA: 3'- -GUGCAUGUgUAUCAGcGgCCGgCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 29846 | 0.7 | 0.626141 |
Target: 5'- uGCGcGC-CGUGcUCGCCGGCCGcGCGg -3' miRNA: 3'- gUGCaUGuGUAUcAGCGGCCGGC-CGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 131746 | 0.7 | 0.626141 |
Target: 5'- gCACGcGgACGgca-CGCCGGCCGGCGc -3' miRNA: 3'- -GUGCaUgUGUaucaGCGGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 12309 | 0.7 | 0.624091 |
Target: 5'- gCACGgGCGCGUAGccggcgggcgcgCGCuUGGCCGGCGc -3' miRNA: 3'- -GUGCaUGUGUAUCa-----------GCG-GCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 55150 | 0.71 | 0.615895 |
Target: 5'- gAUGUGCGCGcgcgAG-CGCCGccGCCGGCGg -3' miRNA: 3'- gUGCAUGUGUa---UCaGCGGC--CGGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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