miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2377 3' -59.6 NC_001416.1 + 11824 0.67 0.342566
Target:  5'- -cUGCAGGCGGauuacaacacgcUGAugGcGGCgGCGAa -3'
miRNA:   3'- uaACGUCCGCC------------GCUugCuCCGgCGUU- -5'
2377 3' -59.6 NC_001416.1 + 44979 0.68 0.302873
Target:  5'- --aGCGGGUGGC--AgGAGGUCGCGc -3'
miRNA:   3'- uaaCGUCCGCCGcuUgCUCCGGCGUu -5'
2377 3' -59.6 NC_001416.1 + 1770 0.68 0.266815
Target:  5'- -cUGCacccAGGUGGUGAACG-GGCUGUAc -3'
miRNA:   3'- uaACG----UCCGCCGCUUGCuCCGGCGUu -5'
2377 3' -59.6 NC_001416.1 + 12662 0.69 0.253394
Target:  5'- uGUUGguGGCGGCGcauccgcgucaGGCGguacagccauucAGGCCGCu- -3'
miRNA:   3'- -UAACguCCGCCGC-----------UUGC------------UCCGGCGuu -5'
2377 3' -59.6 NC_001416.1 + 18474 0.71 0.184209
Target:  5'- cAUUGUaaAGGCGGCGAGCGcGGCuuuucCGCGc -3'
miRNA:   3'- -UAACG--UCCGCCGCUUGCuCCG-----GCGUu -5'
2377 3' -59.6 NC_001416.1 + 18680 0.74 0.101659
Target:  5'- -gUGCGGugauuuaugauggcGCGGCGAACGAGGCgGUAc -3'
miRNA:   3'- uaACGUC--------------CGCCGCUUGCUCCGgCGUu -5'
2377 3' -59.6 NC_001416.1 + 11333 1.03 0.000591
Target:  5'- cAUUGCAGGCGGCGAACGAGGCCGCAAc -3'
miRNA:   3'- -UAACGUCCGCCGCUUGCUCCGGCGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.