Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2377 | 3' | -59.6 | NC_001416.1 | + | 11824 | 0.67 | 0.342566 |
Target: 5'- -cUGCAGGCGGauuacaacacgcUGAugGcGGCgGCGAa -3' miRNA: 3'- uaACGUCCGCC------------GCUugCuCCGgCGUU- -5' |
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2377 | 3' | -59.6 | NC_001416.1 | + | 44979 | 0.68 | 0.302873 |
Target: 5'- --aGCGGGUGGC--AgGAGGUCGCGc -3' miRNA: 3'- uaaCGUCCGCCGcuUgCUCCGGCGUu -5' |
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2377 | 3' | -59.6 | NC_001416.1 | + | 1770 | 0.68 | 0.266815 |
Target: 5'- -cUGCacccAGGUGGUGAACG-GGCUGUAc -3' miRNA: 3'- uaACG----UCCGCCGCUUGCuCCGGCGUu -5' |
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2377 | 3' | -59.6 | NC_001416.1 | + | 12662 | 0.69 | 0.253394 |
Target: 5'- uGUUGguGGCGGCGcauccgcgucaGGCGguacagccauucAGGCCGCu- -3' miRNA: 3'- -UAACguCCGCCGC-----------UUGC------------UCCGGCGuu -5' |
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2377 | 3' | -59.6 | NC_001416.1 | + | 18474 | 0.71 | 0.184209 |
Target: 5'- cAUUGUaaAGGCGGCGAGCGcGGCuuuucCGCGc -3' miRNA: 3'- -UAACG--UCCGCCGCUUGCuCCG-----GCGUu -5' |
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2377 | 3' | -59.6 | NC_001416.1 | + | 18680 | 0.74 | 0.101659 |
Target: 5'- -gUGCGGugauuuaugauggcGCGGCGAACGAGGCgGUAc -3' miRNA: 3'- uaACGUC--------------CGCCGCUUGCUCCGgCGUu -5' |
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2377 | 3' | -59.6 | NC_001416.1 | + | 11333 | 1.03 | 0.000591 |
Target: 5'- cAUUGCAGGCGGCGAACGAGGCCGCAAc -3' miRNA: 3'- -UAACGUCCGCCGCUUGCUCCGGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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