miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 57742 0.66 0.922114
Target:  5'- -gUCCGCguaggaccaccacaCGcCCGGCGCGAucuGGAaGCa -3'
miRNA:   3'- caAGGCGa-------------GCaGGCCGUGCU---UCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 4970 0.66 0.919887
Target:  5'- --gCCGCggCGUCCucuggGGCcCGgAGGGCGCc -3'
miRNA:   3'- caaGGCGa-GCAGG-----CCGuGC-UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 133320 0.66 0.919887
Target:  5'- --gCUGCUCGcgcagcuccugCCGGCACGcgcGCGCg -3'
miRNA:   3'- caaGGCGAGCa----------GGCCGUGCuucUGCG- -5'
23771 3' -55.8 NC_005261.1 + 126071 0.66 0.919887
Target:  5'- --gCCGCcCG-CCGGCcuCGGcGGGCGCg -3'
miRNA:   3'- caaGGCGaGCaGGCCGu-GCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 107346 0.66 0.918192
Target:  5'- -cUCCGCguugcggaccugcgUCGUCgugGGCGCcGGGGCGCc -3'
miRNA:   3'- caAGGCG--------------AGCAGg--CCGUGcUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 53541 0.66 0.914153
Target:  5'- uGUUgCGCUC-UUCGGCcgcgccGCGGcccAGGCGCa -3'
miRNA:   3'- -CAAgGCGAGcAGGCCG------UGCU---UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 93671 0.66 0.914153
Target:  5'- -gUCCGCgggCGg-CGGCGCcGGcgGGGCGCc -3'
miRNA:   3'- caAGGCGa--GCagGCCGUG-CU--UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 43771 0.66 0.914153
Target:  5'- ---gUGCUCGUggggCGGCGCgcgGAGGGCGCc -3'
miRNA:   3'- caagGCGAGCAg---GCCGUG---CUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 101862 0.66 0.914153
Target:  5'- --gCCGCcugcagcaCGUCCGcGCGC-AGGGCGCc -3'
miRNA:   3'- caaGGCGa-------GCAGGC-CGUGcUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 34370 0.66 0.914153
Target:  5'- --gCCGCgCGgcgCC-GCGCGcAGACGCg -3'
miRNA:   3'- caaGGCGaGCa--GGcCGUGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 69517 0.66 0.914153
Target:  5'- cGggCUGC-CGgagCUGGCGCGGGcgcuGGCGCg -3'
miRNA:   3'- -CaaGGCGaGCa--GGCCGUGCUU----CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 71944 0.66 0.912978
Target:  5'- --gCCGCgcgccccacuggCGU-CGGCGCGggG-CGCg -3'
miRNA:   3'- caaGGCGa-----------GCAgGCCGUGCuuCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 135076 0.66 0.908183
Target:  5'- uUUCCggcggcggGCUCGcggcCCGGCGgCGGAG-CGCg -3'
miRNA:   3'- cAAGG--------CGAGCa---GGCCGU-GCUUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 57413 0.66 0.908183
Target:  5'- -aUCCGCgg--CCGGCgccGCGAgcccaGGAUGCg -3'
miRNA:   3'- caAGGCGagcaGGCCG---UGCU-----UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 3345 0.66 0.908183
Target:  5'- --gCCGCggCGcCCGGCGCGccggccuucAGGGcCGCg -3'
miRNA:   3'- caaGGCGa-GCaGGCCGUGC---------UUCU-GCG- -5'
23771 3' -55.8 NC_005261.1 + 43159 0.66 0.908183
Target:  5'- --gCCGC-CGacaUCgCGGCGCGAuacGGCGCc -3'
miRNA:   3'- caaGGCGaGC---AG-GCCGUGCUu--CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 68279 0.66 0.908183
Target:  5'- --cCCGCgcggCGgggccCCGGC-CGcGGGCGCg -3'
miRNA:   3'- caaGGCGa---GCa----GGCCGuGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 83731 0.66 0.908183
Target:  5'- cGUUuaGCUUGa-CGGCGuCGAGGugGCg -3'
miRNA:   3'- -CAAggCGAGCagGCCGU-GCUUCugCG- -5'
23771 3' -55.8 NC_005261.1 + 61226 0.66 0.908183
Target:  5'- -aUCgCGCUCGgcgUUCGGCGCGAGcucGAcuCGCu -3'
miRNA:   3'- caAG-GCGAGC---AGGCCGUGCUU---CU--GCG- -5'
23771 3' -55.8 NC_005261.1 + 102716 0.66 0.908183
Target:  5'- -cUCCGCcgCGUCCGcGCcCGccgccAGGGCGUu -3'
miRNA:   3'- caAGGCGa-GCAGGC-CGuGC-----UUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.