miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 115465 0.66 0.907573
Target:  5'- -cUCCGcCUCGgugUCGGUcgcgggcucggccGCGgcGGCGCg -3'
miRNA:   3'- caAGGC-GAGCa--GGCCG-------------UGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 127818 0.66 0.901979
Target:  5'- cGggCCGCUCGcgcUCgCGGCcGCGAgcagcGGACGg -3'
miRNA:   3'- -CaaGGCGAGC---AG-GCCG-UGCU-----UCUGCg -5'
23771 3' -55.8 NC_005261.1 + 50449 0.66 0.908183
Target:  5'- cGUgaaGCUgCG-CCGGCaggagaccACGAGGACGCu -3'
miRNA:   3'- -CAaggCGA-GCaGGCCG--------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 13374 0.66 0.896196
Target:  5'- --aCCGCUCGUacagCCGGCuguacgcggucucgGagcgguagggcgacgCGAAGGCGCa -3'
miRNA:   3'- caaGGCGAGCA----GGCCG--------------U---------------GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 120928 0.66 0.901979
Target:  5'- -aUCCGCgagCGcCgGGCGCGGgaagguGGAgGCu -3'
miRNA:   3'- caAGGCGa--GCaGgCCGUGCU------UCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 55267 0.66 0.901979
Target:  5'- -gUCUGCgcccccuggCGcgCCGGagGCGggGGCGCu -3'
miRNA:   3'- caAGGCGa--------GCa-GGCCg-UGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 35451 0.66 0.901979
Target:  5'- --cCCGCggGUCUaGGCGCGgcGcGCGCg -3'
miRNA:   3'- caaGGCGagCAGG-CCGUGCuuC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 138019 0.66 0.895542
Target:  5'- --cCCGCa-GcCCGGCGCGGcccggcggcGGugGCg -3'
miRNA:   3'- caaGGCGagCaGGCCGUGCU---------UCugCG- -5'
23771 3' -55.8 NC_005261.1 + 6408 0.66 0.895542
Target:  5'- --cCCGCgcgCGUuggcCCGGCcugcucGCGAGGGCGg -3'
miRNA:   3'- caaGGCGa--GCA----GGCCG------UGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 135366 0.66 0.901979
Target:  5'- aGggCCGCcgCGUCac-CugGGAGACGCu -3'
miRNA:   3'- -CaaGGCGa-GCAGgccGugCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 46076 0.66 0.895542
Target:  5'- --gCCGcCUCGUggCCGGaCACGAGcACGUa -3'
miRNA:   3'- caaGGC-GAGCA--GGCC-GUGCUUcUGCG- -5'
23771 3' -55.8 NC_005261.1 + 133806 0.66 0.895542
Target:  5'- cGggCUGCUCGa-CGGCgACGA-GGCGCu -3'
miRNA:   3'- -CaaGGCGAGCagGCCG-UGCUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 39981 0.66 0.895542
Target:  5'- gGUUgCGCgCGccgCCGGCGugcgUGAAGGCGUa -3'
miRNA:   3'- -CAAgGCGaGCa--GGCCGU----GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 118086 0.66 0.901979
Target:  5'- ---gCGCUCGUCUgcuGGCggcccgccGCGcAGACGCu -3'
miRNA:   3'- caagGCGAGCAGG---CCG--------UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 94148 0.66 0.901979
Target:  5'- --aCCaGCgucagCGcCCGGguCGCGAAGGCGCc -3'
miRNA:   3'- caaGG-CGa----GCaGGCC--GUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 348 0.66 0.895542
Target:  5'- --cCCGCa-GcCCGGCGCGGcccggcggcGGugGCg -3'
miRNA:   3'- caaGGCGagCaGGCCGUGCU---------UCugCG- -5'
23771 3' -55.8 NC_005261.1 + 83039 0.66 0.895542
Target:  5'- aGggCCGCUCG-CC-GCGgGAGGGgGCu -3'
miRNA:   3'- -CaaGGCGAGCaGGcCGUgCUUCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 109104 0.66 0.895542
Target:  5'- --cCCGgaCG-CCGGcCAUGAGGGCGg -3'
miRNA:   3'- caaGGCgaGCaGGCC-GUGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 3345 0.66 0.908183
Target:  5'- --gCCGCggCGcCCGGCGCGccggccuucAGGGcCGCg -3'
miRNA:   3'- caaGGCGa-GCaGGCCGUGC---------UUCU-GCG- -5'
23771 3' -55.8 NC_005261.1 + 16278 0.66 0.901979
Target:  5'- cUUCgGCUCGcCCGG---GggGGCGCc -3'
miRNA:   3'- cAAGgCGAGCaGGCCgugCuuCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.