miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 46798 0.66 0.908183
Target:  5'- ---gCGCcCGUCgCGGCGCGcgcggauGGCGCg -3'
miRNA:   3'- caagGCGaGCAG-GCCGUGCuu-----CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 93671 0.66 0.914153
Target:  5'- -gUCCGCgggCGg-CGGCGCcGGcgGGGCGCc -3'
miRNA:   3'- caAGGCGa--GCagGCCGUG-CU--UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 68279 0.66 0.908183
Target:  5'- --cCCGCgcggCGgggccCCGGC-CGcGGGCGCg -3'
miRNA:   3'- caaGGCGa---GCa----GGCCGuGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 348 0.66 0.895542
Target:  5'- --cCCGCa-GcCCGGCGCGGcccggcggcGGugGCg -3'
miRNA:   3'- caaGGCGagCaGGCCGUGCU---------UCugCG- -5'
23771 3' -55.8 NC_005261.1 + 118086 0.66 0.901979
Target:  5'- ---gCGCUCGUCUgcuGGCggcccgccGCGcAGACGCu -3'
miRNA:   3'- caagGCGAGCAGG---CCG--------UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 13374 0.66 0.896196
Target:  5'- --aCCGCUCGUacagCCGGCuguacgcggucucgGagcgguagggcgacgCGAAGGCGCa -3'
miRNA:   3'- caaGGCGAGCA----GGCCG--------------U---------------GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 133806 0.66 0.895542
Target:  5'- cGggCUGCUCGa-CGGCgACGA-GGCGCu -3'
miRNA:   3'- -CaaGGCGAGCagGCCG-UGCUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 35451 0.66 0.901979
Target:  5'- --cCCGCggGUCUaGGCGCGgcGcGCGCg -3'
miRNA:   3'- caaGGCGagCAGG-CCGUGCuuC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 135366 0.66 0.901979
Target:  5'- aGggCCGCcgCGUCac-CugGGAGACGCu -3'
miRNA:   3'- -CaaGGCGa-GCAGgccGugCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 102716 0.66 0.908183
Target:  5'- -cUCCGCcgCGUCCGcGCcCGccgccAGGGCGUu -3'
miRNA:   3'- caAGGCGa-GCAGGC-CGuGC-----UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 101862 0.66 0.914153
Target:  5'- --gCCGCcugcagcaCGUCCGcGCGC-AGGGCGCc -3'
miRNA:   3'- caaGGCGa-------GCAGGC-CGUGcUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 4970 0.66 0.919887
Target:  5'- --gCCGCggCGUCCucuggGGCcCGgAGGGCGCc -3'
miRNA:   3'- caaGGCGa-GCAGG-----CCGuGC-UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 16278 0.66 0.901979
Target:  5'- cUUCgGCUCGcCCGG---GggGGCGCc -3'
miRNA:   3'- cAAGgCGAGCaGGCCgugCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 94351 0.66 0.908183
Target:  5'- --gUCGaUCGUCCGGCACacAG-CGCa -3'
miRNA:   3'- caaGGCgAGCAGGCCGUGcuUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 127818 0.66 0.901979
Target:  5'- cGggCCGCUCGcgcUCgCGGCcGCGAgcagcGGACGg -3'
miRNA:   3'- -CaaGGCGAGC---AG-GCCG-UGCU-----UCUGCg -5'
23771 3' -55.8 NC_005261.1 + 50449 0.66 0.908183
Target:  5'- cGUgaaGCUgCG-CCGGCaggagaccACGAGGACGCu -3'
miRNA:   3'- -CAaggCGA-GCaGGCCG--------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 69517 0.66 0.914153
Target:  5'- cGggCUGC-CGgagCUGGCGCGGGcgcuGGCGCg -3'
miRNA:   3'- -CaaGGCGaGCa--GGCCGUGCUU----CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 53541 0.66 0.914153
Target:  5'- uGUUgCGCUC-UUCGGCcgcgccGCGGcccAGGCGCa -3'
miRNA:   3'- -CAAgGCGAGcAGGCCG------UGCU---UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 71944 0.66 0.912978
Target:  5'- --gCCGCgcgccccacuggCGU-CGGCGCGggG-CGCg -3'
miRNA:   3'- caaGGCGa-----------GCAgGCCGUGCuuCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 61226 0.66 0.908183
Target:  5'- -aUCgCGCUCGgcgUUCGGCGCGAGcucGAcuCGCu -3'
miRNA:   3'- caAG-GCGAGC---AGGCCGUGCUU---CU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.