Results 41 - 60 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23771 | 3' | -55.8 | NC_005261.1 | + | 43159 | 0.66 | 0.908183 |
Target: 5'- --gCCGC-CGacaUCgCGGCGCGAuacGGCGCc -3' miRNA: 3'- caaGGCGaGC---AG-GCCGUGCUu--CUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 5995 | 0.67 | 0.881986 |
Target: 5'- -cUCCGCUCcUCCcGCGgCGAGGGCu- -3' miRNA: 3'- caAGGCGAGcAGGcCGU-GCUUCUGcg -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 136989 | 0.67 | 0.874874 |
Target: 5'- --cCCGCcuggcaggucgaUCGUgCGGC-CGGAGAgCGCg -3' miRNA: 3'- caaGGCG------------AGCAgGCCGuGCUUCU-GCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 105850 | 0.67 | 0.881986 |
Target: 5'- -gUCCGCgucCGcCCGGU-CGgcGAUGCg -3' miRNA: 3'- caAGGCGa--GCaGGCCGuGCuuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 108677 | 0.67 | 0.888877 |
Target: 5'- -gUCCuCgUCGUCCGGCuCGggGAaGUa -3' miRNA: 3'- caAGGcG-AGCAGGCCGuGCuuCUgCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 100309 | 0.67 | 0.881986 |
Target: 5'- -gUCCGCgUCG-CgGGCGCGcucgaucuccAGGCGCa -3' miRNA: 3'- caAGGCG-AGCaGgCCGUGCu---------UCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 87619 | 0.67 | 0.888877 |
Target: 5'- --aCCGCgaCGUUgGGCGCGA--ACGCc -3' miRNA: 3'- caaGGCGa-GCAGgCCGUGCUucUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 58484 | 0.67 | 0.888877 |
Target: 5'- --gCCGCagG-CCGGCGCGcGGcCGCu -3' miRNA: 3'- caaGGCGagCaGGCCGUGCuUCuGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 57956 | 0.67 | 0.888877 |
Target: 5'- --cCCGUgugCGcacgCCGGCgACGcAGGCGCg -3' miRNA: 3'- caaGGCGa--GCa---GGCCG-UGCuUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 118293 | 0.67 | 0.874874 |
Target: 5'- --gCCGC-CG-CgGGCACcGGGGCGCa -3' miRNA: 3'- caaGGCGaGCaGgCCGUGcUUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 71784 | 0.67 | 0.874874 |
Target: 5'- --cCCGCUCGcagCUGaGCGCGGcccggcccguggGGACGUa -3' miRNA: 3'- caaGGCGAGCa--GGC-CGUGCU------------UCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 30351 | 0.67 | 0.850691 |
Target: 5'- ---gCGCUCGcggcccugaaggCCGGCGCGccGGGCGCc -3' miRNA: 3'- caagGCGAGCa-----------GGCCGUGCu-UCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 61388 | 0.67 | 0.852263 |
Target: 5'- -aUCCGCUUauucaacUCCgGGCGCGuGGugGCc -3' miRNA: 3'- caAGGCGAGc------AGG-CCGUGCuUCugCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 65597 | 0.67 | 0.852263 |
Target: 5'- -cUCCuGCUCG-CCGGgGuCGgcGACGUa -3' miRNA: 3'- caAGG-CGAGCaGGCCgU-GCuuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 49254 | 0.67 | 0.859242 |
Target: 5'- --gCCGCggCGgcgUCGGCGCGcacguccgcgaggAAGGCGCa -3' miRNA: 3'- caaGGCGa-GCa--GGCCGUGC-------------UUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 135758 | 0.67 | 0.860007 |
Target: 5'- --gCCGCgcggugCGcUCCGGCGCaGAG-CGCg -3' miRNA: 3'- caaGGCGa-----GC-AGGCCGUGcUUCuGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 127786 | 0.67 | 0.852263 |
Target: 5'- --gCUGCUCGagCGGCGgGccGGCGCc -3' miRNA: 3'- caaGGCGAGCagGCCGUgCuuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 92602 | 0.67 | 0.866055 |
Target: 5'- --gCCGCUCG--CGGCGCGugccggggccccGGGCGCg -3' miRNA: 3'- caaGGCGAGCagGCCGUGCu-----------UCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 50919 | 0.67 | 0.874151 |
Target: 5'- --gCCGcCUCGcCgGGCGCGggGcuccccugcuucuACGCg -3' miRNA: 3'- caaGGC-GAGCaGgCCGUGCuuC-------------UGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 16063 | 0.67 | 0.874874 |
Target: 5'- --cCCGCgcCGagCCGGCGCGuguAGACGa -3' miRNA: 3'- caaGGCGa-GCa-GGCCGUGCu--UCUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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