miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 51354 0.84 0.138142
Target:  5'- --aCCGCUgggcUGUCCGGCGCGGAGuACGCg -3'
miRNA:   3'- caaGGCGA----GCAGGCCGUGCUUC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 105657 0.8 0.239542
Target:  5'- --aCCGCgUCG-CCGGCGCGgAAGACGCc -3'
miRNA:   3'- caaGGCG-AGCaGGCCGUGC-UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 107068 0.79 0.282929
Target:  5'- -aUCUGCUgccCGggcaCCGGCGCGAAGugGCa -3'
miRNA:   3'- caAGGCGA---GCa---GGCCGUGCUUCugCG- -5'
23771 3' -55.8 NC_005261.1 + 118136 0.78 0.296418
Target:  5'- --gCCGCUCGgCCGGCucGCGcAGACGCu -3'
miRNA:   3'- caaGGCGAGCaGGCCG--UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 67653 0.78 0.296418
Target:  5'- cGggCCGCcCGUCCGcGCGCGGcgccAGGCGCg -3'
miRNA:   3'- -CaaGGCGaGCAGGC-CGUGCU----UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 57869 0.76 0.408081
Target:  5'- ---gCGCUCGggucgggaagucggCCGGCACGggGACGg -3'
miRNA:   3'- caagGCGAGCa-------------GGCCGUGCuuCUGCg -5'
23771 3' -55.8 NC_005261.1 + 99877 0.75 0.439826
Target:  5'- --gCCGC-CGcUCGGCGCGAGGGCGUu -3'
miRNA:   3'- caaGGCGaGCaGGCCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 51940 0.75 0.458059
Target:  5'- --cCCGCUCGUcgCCGGCGCcaccGAcGACGCc -3'
miRNA:   3'- caaGGCGAGCA--GGCCGUG----CUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 90101 0.75 0.458059
Target:  5'- --cCCGUUCG-CCGGCugGGccGACGCg -3'
miRNA:   3'- caaGGCGAGCaGGCCGugCUu-CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 127758 0.75 0.467326
Target:  5'- cGggCCGCgg--CgGGCGCGAAGACGCc -3'
miRNA:   3'- -CaaGGCGagcaGgCCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 97076 0.74 0.495686
Target:  5'- -aUCCGCgUCGgaggcgCCGGCugggcCGggGGCGCc -3'
miRNA:   3'- caAGGCG-AGCa-----GGCCGu----GCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 136949 0.74 0.524799
Target:  5'- uGggCCGCgUCGUCgGGCaagagACGAAGACGg -3'
miRNA:   3'- -CaaGGCG-AGCAGgCCG-----UGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 41004 0.73 0.53465
Target:  5'- -gUCCcCUCGUCCagGGcCGCGAAGACGa -3'
miRNA:   3'- caAGGcGAGCAGG--CC-GUGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 118840 0.73 0.564565
Target:  5'- --gCCGCUC-UgCGGCGCGGAGggcgGCGCg -3'
miRNA:   3'- caaGGCGAGcAgGCCGUGCUUC----UGCG- -5'
23771 3' -55.8 NC_005261.1 + 106654 0.73 0.57464
Target:  5'- -gUCgCGCUCG-CCGGCGCGGucguccaGCGCg -3'
miRNA:   3'- caAG-GCGAGCaGGCCGUGCUuc-----UGCG- -5'
23771 3' -55.8 NC_005261.1 + 68682 0.73 0.57464
Target:  5'- -gUCCGCcgCGUgggggCCGGCGCGGAcGACGg -3'
miRNA:   3'- caAGGCGa-GCA-----GGCCGUGCUU-CUGCg -5'
23771 3' -55.8 NC_005261.1 + 115924 0.73 0.57464
Target:  5'- --gCCGCcgCGUCCGcGCGCGggGcaggguacucguACGCg -3'
miRNA:   3'- caaGGCGa-GCAGGC-CGUGCuuC------------UGCG- -5'
23771 3' -55.8 NC_005261.1 + 75645 0.73 0.57464
Target:  5'- --aCCGCgCGgCCGGCGCGuuccuGGCGCg -3'
miRNA:   3'- caaGGCGaGCaGGCCGUGCuu---CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 33877 0.73 0.57464
Target:  5'- --gCCGCcCGccUCCGGCGCGucaccGGGGCGCg -3'
miRNA:   3'- caaGGCGaGC--AGGCCGUGC-----UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 55853 0.72 0.584755
Target:  5'- -gUCCGCg---CCGGCGCGGAccaaguccacGACGCg -3'
miRNA:   3'- caAGGCGagcaGGCCGUGCUU----------CUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.