miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 92802 0.72 0.594903
Target:  5'- -gUCCGgUCGcCgGGCGCGcGGGCGUg -3'
miRNA:   3'- caAGGCgAGCaGgCCGUGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 34084 0.72 0.594903
Target:  5'- -aUCCGC-CG-CUGGCugGAgGGGCGCc -3'
miRNA:   3'- caAGGCGaGCaGGCCGugCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 121107 0.72 0.594903
Target:  5'- --gCCGUgcggGUCCucuagGGCGCGGAGGCGCg -3'
miRNA:   3'- caaGGCGag--CAGG-----CCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 69620 0.72 0.594903
Target:  5'- --cCCGC-CGcCCGGCACGgcGuGCGCu -3'
miRNA:   3'- caaGGCGaGCaGGCCGUGCuuC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 82598 0.72 0.605079
Target:  5'- cGUUgCGCUgGUCCgGGCGCGuGAGcCGCc -3'
miRNA:   3'- -CAAgGCGAgCAGG-CCGUGC-UUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 87485 0.72 0.635698
Target:  5'- gGUUCgGCgcggcCGUgCUGGCGCGcAGGCGCu -3'
miRNA:   3'- -CAAGgCGa----GCA-GGCCGUGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 14122 0.71 0.645909
Target:  5'- -gUCgGCUCGggCGGUgggcagucgcucGCGAGGACGCu -3'
miRNA:   3'- caAGgCGAGCagGCCG------------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 137055 0.71 0.645909
Target:  5'- --aCCG-UCGgcaGGCGCGGAGGCGCg -3'
miRNA:   3'- caaGGCgAGCaggCCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 8555 0.71 0.645909
Target:  5'- --cCCGCUCGgccgccCCGGgAagUGAGGACGCu -3'
miRNA:   3'- caaGGCGAGCa-----GGCCgU--GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 125321 0.71 0.656109
Target:  5'- -cUCCGCggccucggCGUCCGcaGCGCGcAGGGCGUc -3'
miRNA:   3'- caAGGCGa-------GCAGGC--CGUGC-UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 58276 0.71 0.676443
Target:  5'- --gCCGCgcucaCGgggCCGGCGCGccggGGGGCGCg -3'
miRNA:   3'- caaGGCGa----GCa--GGCCGUGC----UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 120141 0.71 0.685551
Target:  5'- uUUUCGCgcaCGUCCGuccucacGCuCGAGGACGCg -3'
miRNA:   3'- cAAGGCGa--GCAGGC-------CGuGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 89076 0.71 0.686561
Target:  5'- cUUCgGCUgGUaCCGGCuGCGGcccGGGCGCg -3'
miRNA:   3'- cAAGgCGAgCA-GGCCG-UGCU---UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 89193 0.71 0.686561
Target:  5'- --gCCGCUCG-CgGGCGCcGAGgccGACGCg -3'
miRNA:   3'- caaGGCGAGCaGgCCGUG-CUU---CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 129215 0.7 0.696633
Target:  5'- cUUCUGCUgGUgCGGCGCcucAAGugGCu -3'
miRNA:   3'- cAAGGCGAgCAgGCCGUGc--UUCugCG- -5'
23771 3' -55.8 NC_005261.1 + 107255 0.7 0.696633
Target:  5'- --cCCGCgggCGcgCgGGCACGGgcGGGCGCg -3'
miRNA:   3'- caaGGCGa--GCa-GgCCGUGCU--UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 131759 0.7 0.696633
Target:  5'- ---aCGC-CGgCCGGCGCGGcGGGCGCg -3'
miRNA:   3'- caagGCGaGCaGGCCGUGCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 82682 0.7 0.706652
Target:  5'- --gCCGCUCGUCgGGCGCcaccgccGCGCu -3'
miRNA:   3'- caaGGCGAGCAGgCCGUGcuuc---UGCG- -5'
23771 3' -55.8 NC_005261.1 + 113271 0.7 0.706652
Target:  5'- --gCCGUUCGa-CGGCuACGAGGGCGUg -3'
miRNA:   3'- caaGGCGAGCagGCCG-UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 59135 0.7 0.726492
Target:  5'- --aCCGaCUCaggCCGGCGCGccccGGGCGCg -3'
miRNA:   3'- caaGGC-GAGca-GGCCGUGCu---UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.