miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 59135 0.7 0.726492
Target:  5'- --aCCGaCUCaggCCGGCGCGccccGGGCGCg -3'
miRNA:   3'- caaGGC-GAGca-GGCCGUGCu---UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 132616 0.7 0.726492
Target:  5'- --gCCGCcagggggCG-CUGGCGcCGAGGACGCg -3'
miRNA:   3'- caaGGCGa------GCaGGCCGU-GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 71012 0.7 0.736295
Target:  5'- --gCCaGCUCG-CCGcGCAgGAAGGCGUc -3'
miRNA:   3'- caaGG-CGAGCaGGC-CGUgCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 70811 0.7 0.746008
Target:  5'- -gUCCGCgccggCGgccCCgGGCGCGccGGCGCg -3'
miRNA:   3'- caAGGCGa----GCa--GG-CCGUGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 85595 0.7 0.746008
Target:  5'- -cUCCGCgagCGUCaCGGuCACGGu-GCGCg -3'
miRNA:   3'- caAGGCGa--GCAG-GCC-GUGCUucUGCG- -5'
23771 3' -55.8 NC_005261.1 + 109180 0.7 0.746008
Target:  5'- -cUCCGCUagcagcgccgCGUCgGGCguGCGcAGGCGCu -3'
miRNA:   3'- caAGGCGA----------GCAGgCCG--UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 12298 0.69 0.754664
Target:  5'- -gUCCGC-CG-CgGGCACGGgcgcguagccggcGGGCGCg -3'
miRNA:   3'- caAGGCGaGCaGgCCGUGCU-------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 29640 0.69 0.755621
Target:  5'- --gCCGCUgcCG-CCGGU-CGggGACGCc -3'
miRNA:   3'- caaGGCGA--GCaGGCCGuGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 102451 0.69 0.755621
Target:  5'- --gCCGCcCGgccUCGGCGCGcAGGCGCc -3'
miRNA:   3'- caaGGCGaGCa--GGCCGUGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 65642 0.69 0.755621
Target:  5'- -cUCCGCcucUCGccUCUGGCGCGcgccGGCGCg -3'
miRNA:   3'- caAGGCG---AGC--AGGCCGUGCuu--CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 1081 0.69 0.765126
Target:  5'- --cCCGCUCcagggcgaGcCCGGCucgucgucCGAGGACGCg -3'
miRNA:   3'- caaGGCGAG--------CaGGCCGu-------GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 93092 0.69 0.765126
Target:  5'- -aUCCaGCUCGUCCGcaucgcGCGCGucGuCGCc -3'
miRNA:   3'- caAGG-CGAGCAGGC------CGUGCuuCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 138129 0.69 0.774512
Target:  5'- gGggCCGCgaCGgCCGGCGgGAuGGCGCg -3'
miRNA:   3'- -CaaGGCGa-GCaGGCCGUgCUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 32326 0.69 0.774512
Target:  5'- --gCCGCggCGcCCGGCGUGGccugGGACGCg -3'
miRNA:   3'- caaGGCGa-GCaGGCCGUGCU----UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 25363 0.69 0.774512
Target:  5'- --cCCGCUUGgaacaaaaacCCGGCACGgcG-CGCg -3'
miRNA:   3'- caaGGCGAGCa---------GGCCGUGCuuCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 458 0.69 0.774512
Target:  5'- gGggCCGCgaCGgCCGGCGgGAuGGCGCg -3'
miRNA:   3'- -CaaGGCGa-GCaGGCCGUgCUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 56084 0.69 0.781009
Target:  5'- -gUCCGCUCGcuacuuccagcggcUCCuGCGCGAGcGGCGg -3'
miRNA:   3'- caAGGCGAGC--------------AGGcCGUGCUU-CUGCg -5'
23771 3' -55.8 NC_005261.1 + 72795 0.69 0.783773
Target:  5'- gGggCCGCggacaCGUCCaGCAUGAAGACc- -3'
miRNA:   3'- -CaaGGCGa----GCAGGcCGUGCUUCUGcg -5'
23771 3' -55.8 NC_005261.1 + 75815 0.69 0.790175
Target:  5'- ---aCGCUgGUgcCCGGCGCGGccgcgcccggggagGGGCGCg -3'
miRNA:   3'- caagGCGAgCA--GGCCGUGCU--------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 72423 0.69 0.792898
Target:  5'- cUUgCGCUCG-CCGcGCuugcccccgGCGggGGCGCc -3'
miRNA:   3'- cAAgGCGAGCaGGC-CG---------UGCuuCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.