Results 21 - 40 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23771 | 3' | -55.8 | NC_005261.1 | + | 61226 | 0.66 | 0.908183 |
Target: 5'- -aUCgCGCUCGgcgUUCGGCGCGAGcucGAcuCGCu -3' miRNA: 3'- caAG-GCGAGC---AGGCCGUGCUU---CU--GCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 57413 | 0.66 | 0.908183 |
Target: 5'- -aUCCGCgg--CCGGCgccGCGAgcccaGGAUGCg -3' miRNA: 3'- caAGGCGagcaGGCCG---UGCU-----UCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 3345 | 0.66 | 0.908183 |
Target: 5'- --gCCGCggCGcCCGGCGCGccggccuucAGGGcCGCg -3' miRNA: 3'- caaGGCGa-GCaGGCCGUGC---------UUCU-GCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 115465 | 0.66 | 0.907573 |
Target: 5'- -cUCCGcCUCGgugUCGGUcgcgggcucggccGCGgcGGCGCg -3' miRNA: 3'- caAGGC-GAGCa--GGCCG-------------UGCuuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 94148 | 0.66 | 0.901979 |
Target: 5'- --aCCaGCgucagCGcCCGGguCGCGAAGGCGCc -3' miRNA: 3'- caaGG-CGa----GCaGGCC--GUGCUUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 55267 | 0.66 | 0.901979 |
Target: 5'- -gUCUGCgcccccuggCGcgCCGGagGCGggGGCGCu -3' miRNA: 3'- caAGGCGa--------GCa-GGCCg-UGCuuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 16278 | 0.66 | 0.901979 |
Target: 5'- cUUCgGCUCGcCCGG---GggGGCGCc -3' miRNA: 3'- cAAGgCGAGCaGGCCgugCuuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 35451 | 0.66 | 0.901979 |
Target: 5'- --cCCGCggGUCUaGGCGCGgcGcGCGCg -3' miRNA: 3'- caaGGCGagCAGG-CCGUGCuuC-UGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 118086 | 0.66 | 0.901979 |
Target: 5'- ---gCGCUCGUCUgcuGGCggcccgccGCGcAGACGCu -3' miRNA: 3'- caagGCGAGCAGG---CCG--------UGCuUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 127818 | 0.66 | 0.901979 |
Target: 5'- cGggCCGCUCGcgcUCgCGGCcGCGAgcagcGGACGg -3' miRNA: 3'- -CaaGGCGAGC---AG-GCCG-UGCU-----UCUGCg -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 135366 | 0.66 | 0.901979 |
Target: 5'- aGggCCGCcgCGUCac-CugGGAGACGCu -3' miRNA: 3'- -CaaGGCGa-GCAGgccGugCUUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 120928 | 0.66 | 0.901979 |
Target: 5'- -aUCCGCgagCGcCgGGCGCGGgaagguGGAgGCu -3' miRNA: 3'- caAGGCGa--GCaGgCCGUGCU------UCUgCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 13374 | 0.66 | 0.896196 |
Target: 5'- --aCCGCUCGUacagCCGGCuguacgcggucucgGagcgguagggcgacgCGAAGGCGCa -3' miRNA: 3'- caaGGCGAGCA----GGCCG--------------U---------------GCUUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 39981 | 0.66 | 0.895542 |
Target: 5'- gGUUgCGCgCGccgCCGGCGugcgUGAAGGCGUa -3' miRNA: 3'- -CAAgGCGaGCa--GGCCGU----GCUUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 133806 | 0.66 | 0.895542 |
Target: 5'- cGggCUGCUCGa-CGGCgACGA-GGCGCu -3' miRNA: 3'- -CaaGGCGAGCagGCCG-UGCUuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 83039 | 0.66 | 0.895542 |
Target: 5'- aGggCCGCUCG-CC-GCGgGAGGGgGCu -3' miRNA: 3'- -CaaGGCGAGCaGGcCGUgCUUCUgCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 6408 | 0.66 | 0.895542 |
Target: 5'- --cCCGCgcgCGUuggcCCGGCcugcucGCGAGGGCGg -3' miRNA: 3'- caaGGCGa--GCA----GGCCG------UGCUUCUGCg -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 138019 | 0.66 | 0.895542 |
Target: 5'- --cCCGCa-GcCCGGCGCGGcccggcggcGGugGCg -3' miRNA: 3'- caaGGCGagCaGGCCGUGCU---------UCugCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 109104 | 0.66 | 0.895542 |
Target: 5'- --cCCGgaCG-CCGGcCAUGAGGGCGg -3' miRNA: 3'- caaGGCgaGCaGGCC-GUGCUUCUGCg -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 348 | 0.66 | 0.895542 |
Target: 5'- --cCCGCa-GcCCGGCGCGGcccggcggcGGugGCg -3' miRNA: 3'- caaGGCGagCaGGCCGUGCU---------UCugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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