miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 83039 0.66 0.895542
Target:  5'- aGggCCGCUCG-CC-GCGgGAGGGgGCu -3'
miRNA:   3'- -CaaGGCGAGCaGGcCGUgCUUCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 65802 0.67 0.89157
Target:  5'- -aUCCGCggGUCggggugcccgggcggCGGCGCGAAGcUGCc -3'
miRNA:   3'- caAGGCGagCAG---------------GCCGUGCUUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 57956 0.67 0.888877
Target:  5'- --cCCGUgugCGcacgCCGGCgACGcAGGCGCg -3'
miRNA:   3'- caaGGCGa--GCa---GGCCG-UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 58484 0.67 0.888877
Target:  5'- --gCCGCagG-CCGGCGCGcGGcCGCu -3'
miRNA:   3'- caaGGCGagCaGGCCGUGCuUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 87619 0.67 0.888877
Target:  5'- --aCCGCgaCGUUgGGCGCGA--ACGCc -3'
miRNA:   3'- caaGGCGa-GCAGgCCGUGCUucUGCG- -5'
23771 3' -55.8 NC_005261.1 + 108677 0.67 0.888877
Target:  5'- -gUCCuCgUCGUCCGGCuCGggGAaGUa -3'
miRNA:   3'- caAGGcG-AGCAGGCCGuGCuuCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 1624 0.67 0.888877
Target:  5'- -cUCCGCgaaGUCCGGCucccCGAGccccaGCGCc -3'
miRNA:   3'- caAGGCGag-CAGGCCGu---GCUUc----UGCG- -5'
23771 3' -55.8 NC_005261.1 + 59722 0.67 0.888877
Target:  5'- --cCCGC-CGggCGGCAgCGgcGGCGCg -3'
miRNA:   3'- caaGGCGaGCagGCCGU-GCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 100309 0.67 0.881986
Target:  5'- -gUCCGCgUCG-CgGGCGCGcucgaucuccAGGCGCa -3'
miRNA:   3'- caAGGCG-AGCaGgCCGUGCu---------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 5995 0.67 0.881986
Target:  5'- -cUCCGCUCcUCCcGCGgCGAGGGCu- -3'
miRNA:   3'- caAGGCGAGcAGGcCGU-GCUUCUGcg -5'
23771 3' -55.8 NC_005261.1 + 105850 0.67 0.881986
Target:  5'- -gUCCGCgucCGcCCGGU-CGgcGAUGCg -3'
miRNA:   3'- caAGGCGa--GCaGGCCGuGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 136989 0.67 0.874874
Target:  5'- --cCCGCcuggcaggucgaUCGUgCGGC-CGGAGAgCGCg -3'
miRNA:   3'- caaGGCG------------AGCAgGCCGuGCUUCU-GCG- -5'
23771 3' -55.8 NC_005261.1 + 71784 0.67 0.874874
Target:  5'- --cCCGCUCGcagCUGaGCGCGGcccggcccguggGGACGUa -3'
miRNA:   3'- caaGGCGAGCa--GGC-CGUGCU------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 16063 0.67 0.874874
Target:  5'- --cCCGCgcCGagCCGGCGCGuguAGACGa -3'
miRNA:   3'- caaGGCGa-GCa-GGCCGUGCu--UCUGCg -5'
23771 3' -55.8 NC_005261.1 + 118293 0.67 0.874874
Target:  5'- --gCCGC-CG-CgGGCACcGGGGCGCa -3'
miRNA:   3'- caaGGCGaGCaGgCCGUGcUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 50919 0.67 0.874151
Target:  5'- --gCCGcCUCGcCgGGCGCGggGcuccccugcuucuACGCg -3'
miRNA:   3'- caaGGC-GAGCaGgCCGUGCuuC-------------UGCG- -5'
23771 3' -55.8 NC_005261.1 + 53434 0.67 0.872698
Target:  5'- -gUCCGCcagccCGUCgGGCGuCGGgaggucgccgggcgGGACGCa -3'
miRNA:   3'- caAGGCGa----GCAGgCCGU-GCU--------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 54480 0.67 0.867546
Target:  5'- -aUCCGggCGUCgGGCG-GcAGGCGCa -3'
miRNA:   3'- caAGGCgaGCAGgCCGUgCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 110520 0.67 0.867546
Target:  5'- --gCCG-UCGUCUgcggGGCGCagGAGGGCGCg -3'
miRNA:   3'- caaGGCgAGCAGG----CCGUG--CUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 100399 0.67 0.867546
Target:  5'- --gCCGCcgUUGUCCaGCG-GggGGCGCa -3'
miRNA:   3'- caaGGCG--AGCAGGcCGUgCuuCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.