miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 52968 0.67 0.867546
Target:  5'- --gCCGCgccggugCGgcgCCGGCagGCGggGGCGg -3'
miRNA:   3'- caaGGCGa------GCa--GGCCG--UGCuuCUGCg -5'
23771 3' -55.8 NC_005261.1 + 92602 0.67 0.866055
Target:  5'- --gCCGCUCG--CGGCGCGugccggggccccGGGCGCg -3'
miRNA:   3'- caaGGCGAGCagGCCGUGCu-----------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 33587 0.67 0.863802
Target:  5'- --cCCGCgagcaccaggggCGgcgCCGGCGCGGgcggcggggcccggGGGCGCg -3'
miRNA:   3'- caaGGCGa-----------GCa--GGCCGUGCU--------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 135758 0.67 0.860007
Target:  5'- --gCCGCgcggugCGcUCCGGCGCaGAG-CGCg -3'
miRNA:   3'- caaGGCGa-----GC-AGGCCGUGcUUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 1824 0.67 0.860007
Target:  5'- --gCCGCgCGUaagCGGCcucggcgcgcGCGAAGGCGCc -3'
miRNA:   3'- caaGGCGaGCAg--GCCG----------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 44579 0.67 0.860007
Target:  5'- -cUCCGUgcugcgCGUCCGGCGCuucggcuuccuGAucGCGCa -3'
miRNA:   3'- caAGGCGa-----GCAGGCCGUG-----------CUucUGCG- -5'
23771 3' -55.8 NC_005261.1 + 33044 0.67 0.860007
Target:  5'- -gUCCGCggaGggccaggacUCGGCGcCGggGACGCg -3'
miRNA:   3'- caAGGCGag-Ca--------GGCCGU-GCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 69788 0.67 0.860007
Target:  5'- --gCCGCUCccgCgGcGCGCGgcGGCGCg -3'
miRNA:   3'- caaGGCGAGca-GgC-CGUGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 108293 0.67 0.860007
Target:  5'- cGUUgCGCUCG-CCuGCACGGcgucccAGACGg -3'
miRNA:   3'- -CAAgGCGAGCaGGcCGUGCU------UCUGCg -5'
23771 3' -55.8 NC_005261.1 + 121554 0.67 0.860007
Target:  5'- --gCCGC-CGUCCucGGCgaaggGCGggGACGa -3'
miRNA:   3'- caaGGCGaGCAGG--CCG-----UGCuuCUGCg -5'
23771 3' -55.8 NC_005261.1 + 57784 0.67 0.860007
Target:  5'- -gUCCGCggCGUC--GCGCGGcGGGCGCg -3'
miRNA:   3'- caAGGCGa-GCAGgcCGUGCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 49254 0.67 0.859242
Target:  5'- --gCCGCggCGgcgUCGGCGCGcacguccgcgaggAAGGCGCa -3'
miRNA:   3'- caaGGCGa-GCa--GGCCGUGC-------------UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 82335 0.67 0.852263
Target:  5'- -cUCCGCguagCGcugCCGGCgcacgucgGCGucGGCGCg -3'
miRNA:   3'- caAGGCGa---GCa--GGCCG--------UGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 84960 0.67 0.852263
Target:  5'- --gCCGCcgaggCGUCgGGCGCGuccgcGAUGCg -3'
miRNA:   3'- caaGGCGa----GCAGgCCGUGCuu---CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 118908 0.67 0.852263
Target:  5'- --cCUGCgucuggGUCCGGCGCcGcGGGCGCg -3'
miRNA:   3'- caaGGCGag----CAGGCCGUG-CuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 127786 0.67 0.852263
Target:  5'- --gCUGCUCGagCGGCGgGccGGCGCc -3'
miRNA:   3'- caaGGCGAGCagGCCGUgCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 61388 0.67 0.852263
Target:  5'- -aUCCGCUUauucaacUCCgGGCGCGuGGugGCc -3'
miRNA:   3'- caAGGCGAGc------AGG-CCGUGCuUCugCG- -5'
23771 3' -55.8 NC_005261.1 + 65597 0.67 0.852263
Target:  5'- -cUCCuGCUCG-CCGGgGuCGgcGACGUa -3'
miRNA:   3'- caAGG-CGAGCaGGCCgU-GCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 30351 0.67 0.850691
Target:  5'- ---gCGCUCGcggcccugaaggCCGGCGCGccGGGCGCc -3'
miRNA:   3'- caagGCGAGCa-----------GGCCGUGCu-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 131478 0.68 0.847521
Target:  5'- -cUCCGCgagcgCGccgucgacgccuucuUCCGGCACGugcGCGCg -3'
miRNA:   3'- caAGGCGa----GC---------------AGGCCGUGCuucUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.