miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 348 0.66 0.895542
Target:  5'- --cCCGCa-GcCCGGCGCGGcccggcggcGGugGCg -3'
miRNA:   3'- caaGGCGagCaGGCCGUGCU---------UCugCG- -5'
23771 3' -55.8 NC_005261.1 + 458 0.69 0.774512
Target:  5'- gGggCCGCgaCGgCCGGCGgGAuGGCGCg -3'
miRNA:   3'- -CaaGGCGa-GCaGGCCGUgCUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 1081 0.69 0.765126
Target:  5'- --cCCGCUCcagggcgaGcCCGGCucgucgucCGAGGACGCg -3'
miRNA:   3'- caaGGCGAG--------CaGGCCGu-------GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 1624 0.67 0.888877
Target:  5'- -cUCCGCgaaGUCCGGCucccCGAGccccaGCGCc -3'
miRNA:   3'- caAGGCGag-CAGGCCGu---GCUUc----UGCG- -5'
23771 3' -55.8 NC_005261.1 + 1824 0.67 0.860007
Target:  5'- --gCCGCgCGUaagCGGCcucggcgcgcGCGAAGGCGCc -3'
miRNA:   3'- caaGGCGaGCAg--GCCG----------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 3345 0.66 0.908183
Target:  5'- --gCCGCggCGcCCGGCGCGccggccuucAGGGcCGCg -3'
miRNA:   3'- caaGGCGa-GCaGGCCGUGC---------UUCU-GCG- -5'
23771 3' -55.8 NC_005261.1 + 4569 0.68 0.836186
Target:  5'- -aUCCGCgggcggGUCCGGCG---GGGCGCc -3'
miRNA:   3'- caAGGCGag----CAGGCCGUgcuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 4970 0.66 0.919887
Target:  5'- --gCCGCggCGUCCucuggGGCcCGgAGGGCGCc -3'
miRNA:   3'- caaGGCGa-GCAGG-----CCGuGC-UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 5995 0.67 0.881986
Target:  5'- -cUCCGCUCcUCCcGCGgCGAGGGCu- -3'
miRNA:   3'- caAGGCGAGcAGGcCGU-GCUUCUGcg -5'
23771 3' -55.8 NC_005261.1 + 6408 0.66 0.895542
Target:  5'- --cCCGCgcgCGUuggcCCGGCcugcucGCGAGGGCGg -3'
miRNA:   3'- caaGGCGa--GCA----GGCCG------UGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 8555 0.71 0.645909
Target:  5'- --cCCGCUCGgccgccCCGGgAagUGAGGACGCu -3'
miRNA:   3'- caaGGCGAGCa-----GGCCgU--GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 11953 0.68 0.844321
Target:  5'- --gCgGCUCGcCCGGCGCGcgcuccaGCGCa -3'
miRNA:   3'- caaGgCGAGCaGGCCGUGCuuc----UGCG- -5'
23771 3' -55.8 NC_005261.1 + 12083 0.68 0.844321
Target:  5'- -gUCCGCg---CCGGgGCGGcucaaAGGCGCg -3'
miRNA:   3'- caAGGCGagcaGGCCgUGCU-----UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 12298 0.69 0.754664
Target:  5'- -gUCCGC-CG-CgGGCACGGgcgcguagccggcGGGCGCg -3'
miRNA:   3'- caAGGCGaGCaGgCCGUGCU-------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 13374 0.66 0.896196
Target:  5'- --aCCGCUCGUacagCCGGCuguacgcggucucgGagcgguagggcgacgCGAAGGCGCa -3'
miRNA:   3'- caaGGCGAGCA----GGCCG--------------U---------------GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 14122 0.71 0.645909
Target:  5'- -gUCgGCUCGggCGGUgggcagucgcucGCGAGGACGCu -3'
miRNA:   3'- caAGgCGAGCagGCCG------------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 16063 0.67 0.874874
Target:  5'- --cCCGCgcCGagCCGGCGCGuguAGACGa -3'
miRNA:   3'- caaGGCGa-GCa-GGCCGUGCu--UCUGCg -5'
23771 3' -55.8 NC_005261.1 + 16278 0.66 0.901979
Target:  5'- cUUCgGCUCGcCCGG---GggGGCGCc -3'
miRNA:   3'- cAAGgCGAGCaGGCCgugCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 18711 0.68 0.810705
Target:  5'- -gUCgGCgaagcagagaUCGUCgGGCGCGggG-CGCc -3'
miRNA:   3'- caAGgCG----------AGCAGgCCGUGCuuCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 25363 0.69 0.774512
Target:  5'- --cCCGCUUGgaacaaaaacCCGGCACGgcG-CGCg -3'
miRNA:   3'- caaGGCGAGCa---------GGCCGUGCuuCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.