miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 29640 0.69 0.755621
Target:  5'- --gCCGCUgcCG-CCGGU-CGggGACGCc -3'
miRNA:   3'- caaGGCGA--GCaGGCCGuGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 29980 0.68 0.836186
Target:  5'- gGUgcgCCGCcggcgCGUCCGGCAgc--GGCGCg -3'
miRNA:   3'- -CAa--GGCGa----GCAGGCCGUgcuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 30351 0.67 0.850691
Target:  5'- ---gCGCUCGcggcccugaaggCCGGCGCGccGGGCGCc -3'
miRNA:   3'- caagGCGAGCa-----------GGCCGUGCu-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 32326 0.69 0.774512
Target:  5'- --gCCGCggCGcCCGGCGUGGccugGGACGCg -3'
miRNA:   3'- caaGGCGa-GCaGGCCGUGCU----UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 33044 0.67 0.860007
Target:  5'- -gUCCGCggaGggccaggacUCGGCGcCGggGACGCg -3'
miRNA:   3'- caAGGCGag-Ca--------GGCCGU-GCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 33587 0.67 0.863802
Target:  5'- --cCCGCgagcaccaggggCGgcgCCGGCGCGGgcggcggggcccggGGGCGCg -3'
miRNA:   3'- caaGGCGa-----------GCa--GGCCGUGCU--------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 33877 0.73 0.57464
Target:  5'- --gCCGCcCGccUCCGGCGCGucaccGGGGCGCg -3'
miRNA:   3'- caaGGCGaGC--AGGCCGUGC-----UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 34084 0.72 0.594903
Target:  5'- -aUCCGC-CG-CUGGCugGAgGGGCGCc -3'
miRNA:   3'- caAGGCGaGCaGGCCGugCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 34370 0.66 0.914153
Target:  5'- --gCCGCgCGgcgCC-GCGCGcAGACGCg -3'
miRNA:   3'- caaGGCGaGCa--GGcCGUGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 35451 0.66 0.901979
Target:  5'- --cCCGCggGUCUaGGCGCGgcGcGCGCg -3'
miRNA:   3'- caaGGCGagCAGG-CCGUGCuuC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 37300 0.68 0.801878
Target:  5'- --cUCGCggaUCGcCCcccGCACGAGGACGCg -3'
miRNA:   3'- caaGGCG---AGCaGGc--CGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 39981 0.66 0.895542
Target:  5'- gGUUgCGCgCGccgCCGGCGugcgUGAAGGCGUa -3'
miRNA:   3'- -CAAgGCGaGCa--GGCCGU----GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 41004 0.73 0.53465
Target:  5'- -gUCCcCUCGUCCagGGcCGCGAAGACGa -3'
miRNA:   3'- caAGGcGAGCAGG--CC-GUGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 43159 0.66 0.908183
Target:  5'- --gCCGC-CGacaUCgCGGCGCGAuacGGCGCc -3'
miRNA:   3'- caaGGCGaGC---AG-GCCGUGCUu--CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 43425 0.68 0.844321
Target:  5'- -cUCCGC-CG-CCGGCGgGGAGcuggcucgGCGCc -3'
miRNA:   3'- caAGGCGaGCaGGCCGUgCUUC--------UGCG- -5'
23771 3' -55.8 NC_005261.1 + 43771 0.66 0.914153
Target:  5'- ---gUGCUCGUggggCGGCGCgcgGAGGGCGCc -3'
miRNA:   3'- caagGCGAGCAg---GCCGUG---CUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 43839 0.7 0.726492
Target:  5'- --gCUGCUCGg-CGaGgGCGAGGACGCg -3'
miRNA:   3'- caaGGCGAGCagGC-CgUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 44579 0.67 0.860007
Target:  5'- -cUCCGUgcugcgCGUCCGGCGCuucggcuuccuGAucGCGCa -3'
miRNA:   3'- caAGGCGa-----GCAGGCCGUG-----------CUucUGCG- -5'
23771 3' -55.8 NC_005261.1 + 46076 0.66 0.895542
Target:  5'- --gCCGcCUCGUggCCGGaCACGAGcACGUa -3'
miRNA:   3'- caaGGC-GAGCA--GGCC-GUGCUUcUGCG- -5'
23771 3' -55.8 NC_005261.1 + 46798 0.66 0.908183
Target:  5'- ---gCGCcCGUCgCGGCGCGcgcggauGGCGCg -3'
miRNA:   3'- caagGCGaGCAG-GCCGUGCuu-----CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.