miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 49254 0.67 0.859242
Target:  5'- --gCCGCggCGgcgUCGGCGCGcacguccgcgaggAAGGCGCa -3'
miRNA:   3'- caaGGCGa-GCa--GGCCGUGC-------------UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 50449 0.66 0.908183
Target:  5'- cGUgaaGCUgCG-CCGGCaggagaccACGAGGACGCu -3'
miRNA:   3'- -CAaggCGA-GCaGGCCG--------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 50919 0.67 0.874151
Target:  5'- --gCCGcCUCGcCgGGCGCGggGcuccccugcuucuACGCg -3'
miRNA:   3'- caaGGC-GAGCaGgCCGUGCuuC-------------UGCG- -5'
23771 3' -55.8 NC_005261.1 + 51354 0.84 0.138142
Target:  5'- --aCCGCUgggcUGUCCGGCGCGGAGuACGCg -3'
miRNA:   3'- caaGGCGA----GCAGGCCGUGCUUC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 51940 0.75 0.458059
Target:  5'- --cCCGCUCGUcgCCGGCGCcaccGAcGACGCc -3'
miRNA:   3'- caaGGCGAGCA--GGCCGUG----CUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 52968 0.67 0.867546
Target:  5'- --gCCGCgccggugCGgcgCCGGCagGCGggGGCGg -3'
miRNA:   3'- caaGGCGa------GCa--GGCCG--UGCuuCUGCg -5'
23771 3' -55.8 NC_005261.1 + 53434 0.67 0.872698
Target:  5'- -gUCCGCcagccCGUCgGGCGuCGGgaggucgccgggcgGGACGCa -3'
miRNA:   3'- caAGGCGa----GCAGgCCGU-GCU--------------UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 53541 0.66 0.914153
Target:  5'- uGUUgCGCUC-UUCGGCcgcgccGCGGcccAGGCGCa -3'
miRNA:   3'- -CAAgGCGAGcAGGCCG------UGCU---UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 54129 0.68 0.810705
Target:  5'- ----gGCUCGUCCcacGGCACGccGcACGCg -3'
miRNA:   3'- caaggCGAGCAGG---CCGUGCuuC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 54480 0.67 0.867546
Target:  5'- -aUCCGggCGUCgGGCG-GcAGGCGCa -3'
miRNA:   3'- caAGGCgaGCAGgCCGUgCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 55267 0.66 0.901979
Target:  5'- -gUCUGCgcccccuggCGcgCCGGagGCGggGGCGCu -3'
miRNA:   3'- caAGGCGa--------GCa-GGCCg-UGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 55853 0.72 0.584755
Target:  5'- -gUCCGCg---CCGGCGCGGAccaaguccacGACGCg -3'
miRNA:   3'- caAGGCGagcaGGCCGUGCUU----------CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 56084 0.69 0.781009
Target:  5'- -gUCCGCUCGcuacuuccagcggcUCCuGCGCGAGcGGCGg -3'
miRNA:   3'- caAGGCGAGC--------------AGGcCGUGCUU-CUGCg -5'
23771 3' -55.8 NC_005261.1 + 57413 0.66 0.908183
Target:  5'- -aUCCGCgg--CCGGCgccGCGAgcccaGGAUGCg -3'
miRNA:   3'- caAGGCGagcaGGCCG---UGCU-----UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 57742 0.66 0.922114
Target:  5'- -gUCCGCguaggaccaccacaCGcCCGGCGCGAucuGGAaGCa -3'
miRNA:   3'- caAGGCGa-------------GCaGGCCGUGCU---UCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 57784 0.67 0.860007
Target:  5'- -gUCCGCggCGUC--GCGCGGcGGGCGCg -3'
miRNA:   3'- caAGGCGa-GCAGgcCGUGCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 57869 0.76 0.408081
Target:  5'- ---gCGCUCGggucgggaagucggCCGGCACGggGACGg -3'
miRNA:   3'- caagGCGAGCa-------------GGCCGUGCuuCUGCg -5'
23771 3' -55.8 NC_005261.1 + 57956 0.67 0.888877
Target:  5'- --cCCGUgugCGcacgCCGGCgACGcAGGCGCg -3'
miRNA:   3'- caaGGCGa--GCa---GGCCG-UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 58276 0.71 0.676443
Target:  5'- --gCCGCgcucaCGgggCCGGCGCGccggGGGGCGCg -3'
miRNA:   3'- caaGGCGa----GCa--GGCCGUGC----UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 58484 0.67 0.888877
Target:  5'- --gCCGCagG-CCGGCGCGcGGcCGCu -3'
miRNA:   3'- caaGGCGagCaGGCCGUGCuUCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.