miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 138129 0.69 0.774512
Target:  5'- gGggCCGCgaCGgCCGGCGgGAuGGCGCg -3'
miRNA:   3'- -CaaGGCGa-GCaGGCCGUgCUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 138019 0.66 0.895542
Target:  5'- --cCCGCa-GcCCGGCGCGGcccggcggcGGugGCg -3'
miRNA:   3'- caaGGCGagCaGGCCGUGCU---------UCugCG- -5'
23771 3' -55.8 NC_005261.1 + 137055 0.71 0.645909
Target:  5'- --aCCG-UCGgcaGGCGCGGAGGCGCg -3'
miRNA:   3'- caaGGCgAGCaggCCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 136989 0.67 0.874874
Target:  5'- --cCCGCcuggcaggucgaUCGUgCGGC-CGGAGAgCGCg -3'
miRNA:   3'- caaGGCG------------AGCAgGCCGuGCUUCU-GCG- -5'
23771 3' -55.8 NC_005261.1 + 136949 0.74 0.524799
Target:  5'- uGggCCGCgUCGUCgGGCaagagACGAAGACGg -3'
miRNA:   3'- -CaaGGCG-AGCAGgCCG-----UGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 135758 0.67 0.860007
Target:  5'- --gCCGCgcggugCGcUCCGGCGCaGAG-CGCg -3'
miRNA:   3'- caaGGCGa-----GC-AGGCCGUGcUUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 135366 0.66 0.901979
Target:  5'- aGggCCGCcgCGUCac-CugGGAGACGCu -3'
miRNA:   3'- -CaaGGCGa-GCAGgccGugCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 135076 0.66 0.908183
Target:  5'- uUUCCggcggcggGCUCGcggcCCGGCGgCGGAG-CGCg -3'
miRNA:   3'- cAAGG--------CGAGCa---GGCCGU-GCUUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 133806 0.66 0.895542
Target:  5'- cGggCUGCUCGa-CGGCgACGA-GGCGCu -3'
miRNA:   3'- -CaaGGCGAGCagGCCG-UGCUuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 133320 0.66 0.919887
Target:  5'- --gCUGCUCGcgcagcuccugCCGGCACGcgcGCGCg -3'
miRNA:   3'- caaGGCGAGCa----------GGCCGUGCuucUGCG- -5'
23771 3' -55.8 NC_005261.1 + 132616 0.7 0.726492
Target:  5'- --gCCGCcagggggCG-CUGGCGcCGAGGACGCg -3'
miRNA:   3'- caaGGCGa------GCaGGCCGU-GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 131759 0.7 0.696633
Target:  5'- ---aCGC-CGgCCGGCGCGGcGGGCGCg -3'
miRNA:   3'- caagGCGaGCaGGCCGUGCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 131478 0.68 0.847521
Target:  5'- -cUCCGCgagcgCGccgucgacgccuucuUCCGGCACGugcGCGCg -3'
miRNA:   3'- caAGGCGa----GC---------------AGGCCGUGCuucUGCG- -5'
23771 3' -55.8 NC_005261.1 + 129215 0.7 0.696633
Target:  5'- cUUCUGCUgGUgCGGCGCcucAAGugGCu -3'
miRNA:   3'- cAAGGCGAgCAgGCCGUGc--UUCugCG- -5'
23771 3' -55.8 NC_005261.1 + 129175 0.68 0.810705
Target:  5'- --aCCGCUCGUugcugccgcaggCCaGCGCGu-GGCGCa -3'
miRNA:   3'- caaGGCGAGCA------------GGcCGUGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 127818 0.66 0.901979
Target:  5'- cGggCCGCUCGcgcUCgCGGCcGCGAgcagcGGACGg -3'
miRNA:   3'- -CaaGGCGAGC---AG-GCCG-UGCU-----UCUGCg -5'
23771 3' -55.8 NC_005261.1 + 127786 0.67 0.852263
Target:  5'- --gCUGCUCGagCGGCGgGccGGCGCc -3'
miRNA:   3'- caaGGCGAGCagGCCGUgCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 127758 0.75 0.467326
Target:  5'- cGggCCGCgg--CgGGCGCGAAGACGCc -3'
miRNA:   3'- -CaaGGCGagcaGgCCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 126071 0.66 0.919887
Target:  5'- --gCCGCcCG-CCGGCcuCGGcGGGCGCg -3'
miRNA:   3'- caaGGCGaGCaGGCCGu-GCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 125321 0.71 0.656109
Target:  5'- -cUCCGCggccucggCGUCCGcaGCGCGcAGGGCGUc -3'
miRNA:   3'- caAGGCGa-------GCAGGC--CGUGC-UUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.