miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 121554 0.67 0.860007
Target:  5'- --gCCGC-CGUCCucGGCgaaggGCGggGACGa -3'
miRNA:   3'- caaGGCGaGCAGG--CCG-----UGCuuCUGCg -5'
23771 3' -55.8 NC_005261.1 + 121107 0.72 0.594903
Target:  5'- --gCCGUgcggGUCCucuagGGCGCGGAGGCGCg -3'
miRNA:   3'- caaGGCGag--CAGG-----CCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 120928 0.66 0.901979
Target:  5'- -aUCCGCgagCGcCgGGCGCGGgaagguGGAgGCu -3'
miRNA:   3'- caAGGCGa--GCaGgCCGUGCU------UCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 120141 0.71 0.685551
Target:  5'- uUUUCGCgcaCGUCCGuccucacGCuCGAGGACGCg -3'
miRNA:   3'- cAAGGCGa--GCAGGC-------CGuGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 118908 0.67 0.852263
Target:  5'- --cCUGCgucuggGUCCGGCGCcGcGGGCGCg -3'
miRNA:   3'- caaGGCGag----CAGGCCGUG-CuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 118840 0.73 0.564565
Target:  5'- --gCCGCUC-UgCGGCGCGGAGggcgGCGCg -3'
miRNA:   3'- caaGGCGAGcAgGCCGUGCUUC----UGCG- -5'
23771 3' -55.8 NC_005261.1 + 118293 0.67 0.874874
Target:  5'- --gCCGC-CG-CgGGCACcGGGGCGCa -3'
miRNA:   3'- caaGGCGaGCaGgCCGUGcUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 118136 0.78 0.296418
Target:  5'- --gCCGCUCGgCCGGCucGCGcAGACGCu -3'
miRNA:   3'- caaGGCGAGCaGGCCG--UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 118086 0.66 0.901979
Target:  5'- ---gCGCUCGUCUgcuGGCggcccgccGCGcAGACGCu -3'
miRNA:   3'- caagGCGAGCAGG---CCG--------UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 115924 0.73 0.57464
Target:  5'- --gCCGCcgCGUCCGcGCGCGggGcaggguacucguACGCg -3'
miRNA:   3'- caaGGCGa-GCAGGC-CGUGCuuC------------UGCG- -5'
23771 3' -55.8 NC_005261.1 + 115465 0.66 0.907573
Target:  5'- -cUCCGcCUCGgugUCGGUcgcgggcucggccGCGgcGGCGCg -3'
miRNA:   3'- caAGGC-GAGCa--GGCCG-------------UGCuuCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 115273 0.68 0.836186
Target:  5'- --gCCGCgCGUCUGGgACGcGGGCaGCa -3'
miRNA:   3'- caaGGCGaGCAGGCCgUGCuUCUG-CG- -5'
23771 3' -55.8 NC_005261.1 + 113271 0.7 0.706652
Target:  5'- --gCCGUUCGa-CGGCuACGAGGGCGUg -3'
miRNA:   3'- caaGGCGAGCagGCCG-UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 110520 0.67 0.867546
Target:  5'- --gCCG-UCGUCUgcggGGCGCagGAGGGCGCg -3'
miRNA:   3'- caaGGCgAGCAGG----CCGUG--CUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 109180 0.7 0.746008
Target:  5'- -cUCCGCUagcagcgccgCGUCgGGCguGCGcAGGCGCu -3'
miRNA:   3'- caAGGCGA----------GCAGgCCG--UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 109104 0.66 0.895542
Target:  5'- --cCCGgaCG-CCGGcCAUGAGGGCGg -3'
miRNA:   3'- caaGGCgaGCaGGCC-GUGCUUCUGCg -5'
23771 3' -55.8 NC_005261.1 + 108677 0.67 0.888877
Target:  5'- -gUCCuCgUCGUCCGGCuCGggGAaGUa -3'
miRNA:   3'- caAGGcG-AGCAGGCCGuGCuuCUgCG- -5'
23771 3' -55.8 NC_005261.1 + 108293 0.67 0.860007
Target:  5'- cGUUgCGCUCG-CCuGCACGGcgucccAGACGg -3'
miRNA:   3'- -CAAgGCGAGCaGGcCGUGCU------UCUGCg -5'
23771 3' -55.8 NC_005261.1 + 107346 0.66 0.918192
Target:  5'- -cUCCGCguugcggaccugcgUCGUCgugGGCGCcGGGGCGCc -3'
miRNA:   3'- caAGGCG--------------AGCAGg--CCGUGcUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 107255 0.7 0.696633
Target:  5'- --cCCGCgggCGcgCgGGCACGGgcGGGCGCg -3'
miRNA:   3'- caaGGCGa--GCa-GgCCGUGCU--UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.