Results 21 - 40 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23771 | 3' | -55.8 | NC_005261.1 | + | 69620 | 0.72 | 0.594903 |
Target: 5'- --cCCGC-CGcCCGGCACGgcGuGCGCu -3' miRNA: 3'- caaGGCGaGCaGGCCGUGCuuC-UGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 55853 | 0.72 | 0.584755 |
Target: 5'- -gUCCGCg---CCGGCGCGGAccaaguccacGACGCg -3' miRNA: 3'- caAGGCGagcaGGCCGUGCUU----------CUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 90101 | 0.75 | 0.458059 |
Target: 5'- --cCCGUUCG-CCGGCugGGccGACGCg -3' miRNA: 3'- caaGGCGAGCaGGCCGugCUu-CUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 51940 | 0.75 | 0.458059 |
Target: 5'- --cCCGCUCGUcgCCGGCGCcaccGAcGACGCc -3' miRNA: 3'- caaGGCGAGCA--GGCCGUG----CUuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 99877 | 0.75 | 0.439826 |
Target: 5'- --gCCGC-CGcUCGGCGCGAGGGCGUu -3' miRNA: 3'- caaGGCGaGCaGGCCGUGCUUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 57869 | 0.76 | 0.408081 |
Target: 5'- ---gCGCUCGggucgggaagucggCCGGCACGggGACGg -3' miRNA: 3'- caagGCGAGCa-------------GGCCGUGCuuCUGCg -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 67653 | 0.78 | 0.296418 |
Target: 5'- cGggCCGCcCGUCCGcGCGCGGcgccAGGCGCg -3' miRNA: 3'- -CaaGGCGaGCAGGC-CGUGCU----UCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 118136 | 0.78 | 0.296418 |
Target: 5'- --gCCGCUCGgCCGGCucGCGcAGACGCu -3' miRNA: 3'- caaGGCGAGCaGGCCG--UGCuUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 107068 | 0.79 | 0.282929 |
Target: 5'- -aUCUGCUgccCGggcaCCGGCGCGAAGugGCa -3' miRNA: 3'- caAGGCGA---GCa---GGCCGUGCUUCugCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 105657 | 0.8 | 0.239542 |
Target: 5'- --aCCGCgUCG-CCGGCGCGgAAGACGCc -3' miRNA: 3'- caaGGCG-AGCaGGCCGUGC-UUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 127758 | 0.75 | 0.467326 |
Target: 5'- cGggCCGCgg--CgGGCGCGAAGACGCc -3' miRNA: 3'- -CaaGGCGagcaGgCCGUGCUUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 97076 | 0.74 | 0.495686 |
Target: 5'- -aUCCGCgUCGgaggcgCCGGCugggcCGggGGCGCc -3' miRNA: 3'- caAGGCG-AGCa-----GGCCGu----GCuuCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 106654 | 0.73 | 0.57464 |
Target: 5'- -gUCgCGCUCG-CCGGCGCGGucguccaGCGCg -3' miRNA: 3'- caAG-GCGAGCaGGCCGUGCUuc-----UGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 68682 | 0.73 | 0.57464 |
Target: 5'- -gUCCGCcgCGUgggggCCGGCGCGGAcGACGg -3' miRNA: 3'- caAGGCGa-GCA-----GGCCGUGCUU-CUGCg -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 115924 | 0.73 | 0.57464 |
Target: 5'- --gCCGCcgCGUCCGcGCGCGggGcaggguacucguACGCg -3' miRNA: 3'- caaGGCGa-GCAGGC-CGUGCuuC------------UGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 75645 | 0.73 | 0.57464 |
Target: 5'- --aCCGCgCGgCCGGCGCGuuccuGGCGCg -3' miRNA: 3'- caaGGCGaGCaGGCCGUGCuu---CUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 33877 | 0.73 | 0.57464 |
Target: 5'- --gCCGCcCGccUCCGGCGCGucaccGGGGCGCg -3' miRNA: 3'- caaGGCGaGC--AGGCCGUGC-----UUCUGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 118840 | 0.73 | 0.564565 |
Target: 5'- --gCCGCUC-UgCGGCGCGGAGggcgGCGCg -3' miRNA: 3'- caaGGCGAGcAgGCCGUGCUUC----UGCG- -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 41004 | 0.73 | 0.53465 |
Target: 5'- -gUCCcCUCGUCCagGGcCGCGAAGACGa -3' miRNA: 3'- caAGGcGAGCAGG--CC-GUGCUUCUGCg -5' |
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23771 | 3' | -55.8 | NC_005261.1 | + | 136949 | 0.74 | 0.524799 |
Target: 5'- uGggCCGCgUCGUCgGGCaagagACGAAGACGg -3' miRNA: 3'- -CaaGGCG-AGCAGgCCG-----UGCUUCUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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