miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 3' -55.8 NC_005261.1 + 57869 0.76 0.408081
Target:  5'- ---gCGCUCGggucgggaagucggCCGGCACGggGACGg -3'
miRNA:   3'- caagGCGAGCa-------------GGCCGUGCuuCUGCg -5'
23771 3' -55.8 NC_005261.1 + 67653 0.78 0.296418
Target:  5'- cGggCCGCcCGUCCGcGCGCGGcgccAGGCGCg -3'
miRNA:   3'- -CaaGGCGaGCAGGC-CGUGCU----UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 118136 0.78 0.296418
Target:  5'- --gCCGCUCGgCCGGCucGCGcAGACGCu -3'
miRNA:   3'- caaGGCGAGCaGGCCG--UGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 107068 0.79 0.282929
Target:  5'- -aUCUGCUgccCGggcaCCGGCGCGAAGugGCa -3'
miRNA:   3'- caAGGCGA---GCa---GGCCGUGCUUCugCG- -5'
23771 3' -55.8 NC_005261.1 + 105657 0.8 0.239542
Target:  5'- --aCCGCgUCG-CCGGCGCGgAAGACGCc -3'
miRNA:   3'- caaGGCG-AGCaGGCCGUGC-UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 33877 0.73 0.57464
Target:  5'- --gCCGCcCGccUCCGGCGCGucaccGGGGCGCg -3'
miRNA:   3'- caaGGCGaGC--AGGCCGUGC-----UUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 75645 0.73 0.57464
Target:  5'- --aCCGCgCGgCCGGCGCGuuccuGGCGCg -3'
miRNA:   3'- caaGGCGaGCaGGCCGUGCuu---CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 8555 0.71 0.645909
Target:  5'- --cCCGCUCGgccgccCCGGgAagUGAGGACGCu -3'
miRNA:   3'- caaGGCGAGCa-----GGCCgU--GCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 137055 0.71 0.645909
Target:  5'- --aCCG-UCGgcaGGCGCGGAGGCGCg -3'
miRNA:   3'- caaGGCgAGCaggCCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 14122 0.71 0.645909
Target:  5'- -gUCgGCUCGggCGGUgggcagucgcucGCGAGGACGCu -3'
miRNA:   3'- caAGgCGAGCagGCCG------------UGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 87485 0.72 0.635698
Target:  5'- gGUUCgGCgcggcCGUgCUGGCGCGcAGGCGCu -3'
miRNA:   3'- -CAAGgCGa----GCA-GGCCGUGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 82598 0.72 0.605079
Target:  5'- cGUUgCGCUgGUCCgGGCGCGuGAGcCGCc -3'
miRNA:   3'- -CAAgGCGAgCAGG-CCGUGC-UUCuGCG- -5'
23771 3' -55.8 NC_005261.1 + 92802 0.72 0.594903
Target:  5'- -gUCCGgUCGcCgGGCGCGcGGGCGUg -3'
miRNA:   3'- caAGGCgAGCaGgCCGUGCuUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 34084 0.72 0.594903
Target:  5'- -aUCCGC-CG-CUGGCugGAgGGGCGCc -3'
miRNA:   3'- caAGGCGaGCaGGCCGugCU-UCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 121107 0.72 0.594903
Target:  5'- --gCCGUgcggGUCCucuagGGCGCGGAGGCGCg -3'
miRNA:   3'- caaGGCGag--CAGG-----CCGUGCUUCUGCG- -5'
23771 3' -55.8 NC_005261.1 + 69620 0.72 0.594903
Target:  5'- --cCCGC-CGcCCGGCACGgcGuGCGCu -3'
miRNA:   3'- caaGGCGaGCaGGCCGUGCuuC-UGCG- -5'
23771 3' -55.8 NC_005261.1 + 55853 0.72 0.584755
Target:  5'- -gUCCGCg---CCGGCGCGGAccaaguccacGACGCg -3'
miRNA:   3'- caAGGCGagcaGGCCGUGCUU----------CUGCG- -5'
23771 3' -55.8 NC_005261.1 + 106654 0.73 0.57464
Target:  5'- -gUCgCGCUCG-CCGGCGCGGucguccaGCGCg -3'
miRNA:   3'- caAG-GCGAGCaGGCCGUGCUuc-----UGCG- -5'
23771 3' -55.8 NC_005261.1 + 68682 0.73 0.57464
Target:  5'- -gUCCGCcgCGUgggggCCGGCGCGGAcGACGg -3'
miRNA:   3'- caAGGCGa-GCA-----GGCCGUGCUU-CUGCg -5'
23771 3' -55.8 NC_005261.1 + 115924 0.73 0.57464
Target:  5'- --gCCGCcgCGUCCGcGCGCGggGcaggguacucguACGCg -3'
miRNA:   3'- caaGGCGa-GCAGGC-CGUGCuuC------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.