miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 5' -59.9 NC_005261.1 + 31717 0.66 0.682694
Target:  5'- cGUGGAccccgcgaacUGgCCGCGCgauggcccggccgUCGGGCAGGCGc -3'
miRNA:   3'- -CACCU----------ACaGGUGCG-------------GGUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 60329 0.66 0.680661
Target:  5'- gGUGGAcgacggUGUuugcggcgccgcggCCGCGCgCCAGGCAGuGCu- -3'
miRNA:   3'- -CACCU------ACA--------------GGUGCG-GGUCCGUC-CGuu -5'
23771 5' -59.9 NC_005261.1 + 94298 0.66 0.673532
Target:  5'- aUGGcGUaGUCgGCGaCCCAGGgGGGCGc -3'
miRNA:   3'- cACC-UA-CAGgUGC-GGGUCCgUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 46110 0.66 0.653081
Target:  5'- -gGGGgccgugGUCCGCGUCCA-GCAGGUc- -3'
miRNA:   3'- caCCUa-----CAGGUGCGGGUcCGUCCGuu -5'
23771 5' -59.9 NC_005261.1 + 55262 0.66 0.652057
Target:  5'- -aGGAgGUCUGCGCCCccuggcgcgccggAGGCGGGgGc -3'
miRNA:   3'- caCCUaCAGGUGCGGG-------------UCCGUCCgUu -5'
23771 5' -59.9 NC_005261.1 + 128773 0.66 0.650006
Target:  5'- -gGGAaaacugcgcgccguUGUCUggGCGCCCGGGCccgcGGCGGg -3'
miRNA:   3'- caCCU--------------ACAGG--UGCGGGUCCGu---CCGUU- -5'
23771 5' -59.9 NC_005261.1 + 71171 0.66 0.642827
Target:  5'- -gGGAUGaaCGCGUCCGGGCgcagcucgcgGGGCGc -3'
miRNA:   3'- caCCUACagGUGCGGGUCCG----------UCCGUu -5'
23771 5' -59.9 NC_005261.1 + 12079 0.66 0.642827
Target:  5'- -cGGc-GUCCGCGCCgGGGC-GGCu- -3'
miRNA:   3'- caCCuaCAGGUGCGGgUCCGuCCGuu -5'
23771 5' -59.9 NC_005261.1 + 9643 0.66 0.632563
Target:  5'- cUGGGUGggCgGgGCCCacucGGGCGGGCGc -3'
miRNA:   3'- cACCUACa-GgUgCGGG----UCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 72849 0.67 0.6223
Target:  5'- -aGGgcG-CCAgCGCCCAGGCguggaccgcGGGCAGg -3'
miRNA:   3'- caCCuaCaGGU-GCGGGUCCG---------UCCGUU- -5'
23771 5' -59.9 NC_005261.1 + 98292 0.67 0.612044
Target:  5'- -cGGcgcGUCCGCgGCCUcggGGGCGGGCGc -3'
miRNA:   3'- caCCua-CAGGUG-CGGG---UCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 47075 0.67 0.612044
Target:  5'- cGUGGuacgcGUgCACGCCgaAGGCGGGCc- -3'
miRNA:   3'- -CACCua---CAgGUGCGGg-UCCGUCCGuu -5'
23771 5' -59.9 NC_005261.1 + 23786 0.67 0.601803
Target:  5'- -aGGGUGggCuCGCCgGGGCAGGCc- -3'
miRNA:   3'- caCCUACagGuGCGGgUCCGUCCGuu -5'
23771 5' -59.9 NC_005261.1 + 3432 0.67 0.601803
Target:  5'- -cGGg---CCAgCGUCCAGGCGGGCGc -3'
miRNA:   3'- caCCuacaGGU-GCGGGUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 23843 0.67 0.601803
Target:  5'- -aGGGUGggCuCGCCgGGGCAGGCc- -3'
miRNA:   3'- caCCUACagGuGCGGgUCCGUCCGuu -5'
23771 5' -59.9 NC_005261.1 + 124221 0.67 0.590565
Target:  5'- cGUGGcUG-CCAgcagcccaaccgcCGCCgCGGGCAGGCGc -3'
miRNA:   3'- -CACCuACaGGU-------------GCGG-GUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 52251 0.67 0.580379
Target:  5'- cGUGGGagggcgcUGUCCGCGCCgGGG--GGCGGu -3'
miRNA:   3'- -CACCU-------ACAGGUGCGGgUCCguCCGUU- -5'
23771 5' -59.9 NC_005261.1 + 13071 0.67 0.571244
Target:  5'- -cGGGcgcGUCCGCcgGCCCGucGGCGGGCGg -3'
miRNA:   3'- caCCUa--CAGGUG--CGGGU--CCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 97360 0.67 0.571244
Target:  5'- cGUGGG-GUCUACgGCCCGGGCGugucgccgcgcGGCu- -3'
miRNA:   3'- -CACCUaCAGGUG-CGGGUCCGU-----------CCGuu -5'
23771 5' -59.9 NC_005261.1 + 121779 0.68 0.551077
Target:  5'- -gGGGUGgCCGCGgCC-GGCGGGCu- -3'
miRNA:   3'- caCCUACaGGUGCgGGuCCGUCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.