miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 5' -59.9 NC_005261.1 + 63009 0.7 0.409628
Target:  5'- -cGGcgG-CCGCGCCCGcGCGGGCGc -3'
miRNA:   3'- caCCuaCaGGUGCGGGUcCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 71171 0.66 0.642827
Target:  5'- -gGGAUGaaCGCGUCCGGGCgcagcucgcgGGGCGc -3'
miRNA:   3'- caCCUACagGUGCGGGUCCG----------UCCGUu -5'
23771 5' -59.9 NC_005261.1 + 72849 0.67 0.6223
Target:  5'- -aGGgcG-CCAgCGCCCAGGCguggaccgcGGGCAGg -3'
miRNA:   3'- caCCuaCaGGU-GCGGGUCCG---------UCCGUU- -5'
23771 5' -59.9 NC_005261.1 + 85368 0.69 0.495933
Target:  5'- -aGGAUGUUCGCGCCgccgcccucgggcuuCuGGUAGGCGc -3'
miRNA:   3'- caCCUACAGGUGCGG---------------GuCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 94298 0.66 0.673532
Target:  5'- aUGGcGUaGUCgGCGaCCCAGGgGGGCGc -3'
miRNA:   3'- cACC-UA-CAGgUGC-GGGUCCgUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 97360 0.67 0.571244
Target:  5'- cGUGGG-GUCUACgGCCCGGGCGugucgccgcgcGGCu- -3'
miRNA:   3'- -CACCUaCAGGUG-CGGGUCCGU-----------CCGuu -5'
23771 5' -59.9 NC_005261.1 + 98292 0.67 0.612044
Target:  5'- -cGGcgcGUCCGCgGCCUcggGGGCGGGCGc -3'
miRNA:   3'- caCCua-CAGGUG-CGGG---UCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 106548 0.7 0.427216
Target:  5'- -cGGcgG-CCGCGUCCGGGCcGGCGc -3'
miRNA:   3'- caCCuaCaGGUGCGGGUCCGuCCGUu -5'
23771 5' -59.9 NC_005261.1 + 109126 0.69 0.482529
Target:  5'- -gGcGGUGUCgugCGCGgcCCCAGGCAGGCGc -3'
miRNA:   3'- caC-CUACAG---GUGC--GGGUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 118810 0.76 0.1941
Target:  5'- cGUGGgcGUCUGCGCCCuGGGCGcGGCAc -3'
miRNA:   3'- -CACCuaCAGGUGCGGG-UCCGU-CCGUu -5'
23771 5' -59.9 NC_005261.1 + 121779 0.68 0.551077
Target:  5'- -gGGGUGgCCGCGgCC-GGCGGGCu- -3'
miRNA:   3'- caCCUACaGGUGCgGGuCCGUCCGuu -5'
23771 5' -59.9 NC_005261.1 + 124221 0.67 0.590565
Target:  5'- cGUGGcUG-CCAgcagcccaaccgcCGCCgCGGGCAGGCGc -3'
miRNA:   3'- -CACCuACaGGU-------------GCGG-GUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 128773 0.66 0.650006
Target:  5'- -gGGAaaacugcgcgccguUGUCUggGCGCCCGGGCccgcGGCGGg -3'
miRNA:   3'- caCCU--------------ACAGG--UGCGGGUCCGu---CCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.