miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23771 5' -59.9 NC_005261.1 + 31717 0.66 0.682694
Target:  5'- cGUGGAccccgcgaacUGgCCGCGCgauggcccggccgUCGGGCAGGCGc -3'
miRNA:   3'- -CACCU----------ACaGGUGCG-------------GGUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 23485 0.68 0.541073
Target:  5'- aGUGcGcgGgCC-CGCCUGGGCAGGCGc -3'
miRNA:   3'- -CAC-CuaCaGGuGCGGGUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 121779 0.68 0.551077
Target:  5'- -gGGGUGgCCGCGgCC-GGCGGGCu- -3'
miRNA:   3'- caCCUACaGGUGCgGGuCCGUCCGuu -5'
23771 5' -59.9 NC_005261.1 + 97360 0.67 0.571244
Target:  5'- cGUGGG-GUCUACgGCCCGGGCGugucgccgcgcGGCu- -3'
miRNA:   3'- -CACCUaCAGGUG-CGGGUCCGU-----------CCGuu -5'
23771 5' -59.9 NC_005261.1 + 13071 0.67 0.571244
Target:  5'- -cGGGcgcGUCCGCcgGCCCGucGGCGGGCGg -3'
miRNA:   3'- caCCUa--CAGGUG--CGGGU--CCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 52251 0.67 0.580379
Target:  5'- cGUGGGagggcgcUGUCCGCGCCgGGG--GGCGGu -3'
miRNA:   3'- -CACCU-------ACAGGUGCGGgUCCguCCGUU- -5'
23771 5' -59.9 NC_005261.1 + 124221 0.67 0.590565
Target:  5'- cGUGGcUG-CCAgcagcccaaccgcCGCCgCGGGCAGGCGc -3'
miRNA:   3'- -CACCuACaGGU-------------GCGG-GUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 3432 0.67 0.601803
Target:  5'- -cGGg---CCAgCGUCCAGGCGGGCGc -3'
miRNA:   3'- caCCuacaGGU-GCGGGUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 23786 0.67 0.601803
Target:  5'- -aGGGUGggCuCGCCgGGGCAGGCc- -3'
miRNA:   3'- caCCUACagGuGCGGgUCCGUCCGuu -5'
23771 5' -59.9 NC_005261.1 + 52990 0.68 0.521257
Target:  5'- -aGGcgGgggCgGCGCCCAGGCGucGGCGc -3'
miRNA:   3'- caCCuaCa--GgUGCGGGUCCGU--CCGUu -5'
23771 5' -59.9 NC_005261.1 + 85368 0.69 0.495933
Target:  5'- -aGGAUGUUCGCGCCgccgcccucgggcuuCuGGUAGGCGc -3'
miRNA:   3'- caCCUACAGGUGCGG---------------GuCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 109126 0.69 0.482529
Target:  5'- -gGcGGUGUCgugCGCGgcCCCAGGCAGGCGc -3'
miRNA:   3'- caC-CUACAG---GUGC--GGGUCCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 118810 0.76 0.1941
Target:  5'- cGUGGgcGUCUGCGCCCuGGGCGcGGCAc -3'
miRNA:   3'- -CACCuaCAGGUGCGGG-UCCGU-CCGUu -5'
23771 5' -59.9 NC_005261.1 + 1269 0.71 0.359665
Target:  5'- -gGGGUGacugugCCgGCGCCCAGGCcGGCGGg -3'
miRNA:   3'- caCCUACa-----GG-UGCGGGUCCGuCCGUU- -5'
23771 5' -59.9 NC_005261.1 + 23728 0.7 0.401004
Target:  5'- -cGGGUGgCCGCGCCgAGGCgcguccgggagGGGCGGg -3'
miRNA:   3'- caCCUACaGGUGCGGgUCCG-----------UCCGUU- -5'
23771 5' -59.9 NC_005261.1 + 63009 0.7 0.409628
Target:  5'- -cGGcgG-CCGCGCCCGcGCGGGCGc -3'
miRNA:   3'- caCCuaCaGGUGCGGGUcCGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 106548 0.7 0.427216
Target:  5'- -cGGcgG-CCGCGUCCGGGCcGGCGc -3'
miRNA:   3'- caCCuaCaGGUGCGGGUCCGuCCGUu -5'
23771 5' -59.9 NC_005261.1 + 59086 0.7 0.436177
Target:  5'- -cGGGUGcgCCGCGCCCucgcgcucGCAGGCGc -3'
miRNA:   3'- caCCUACa-GGUGCGGGuc------CGUCCGUu -5'
23771 5' -59.9 NC_005261.1 + 6225 0.69 0.454417
Target:  5'- cUGGcgGUCCagguGCGCCCGGGgaGGGCc- -3'
miRNA:   3'- cACCuaCAGG----UGCGGGUCCg-UCCGuu -5'
23771 5' -59.9 NC_005261.1 + 1369 0.69 0.463691
Target:  5'- -cGGGcccugGUCCGCGuCCCAGGCcacgccGGGCGc -3'
miRNA:   3'- caCCUa----CAGGUGC-GGGUCCG------UCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.