miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 3' -57.5 NC_005261.1 + 27450 0.69 0.733831
Target:  5'- gUUUGGCGGCGggccgcccCGCGGGGCGggcaggCCCu -3'
miRNA:   3'- aGAGCUGCUGCa-------GCGCCCUGUa-----GGGc -5'
23773 3' -57.5 NC_005261.1 + 16430 0.69 0.724224
Target:  5'- cCUCGACGGCGg-GCGGcGGCucguagCCCu -3'
miRNA:   3'- aGAGCUGCUGCagCGCC-CUGua----GGGc -5'
23773 3' -57.5 NC_005261.1 + 71071 0.69 0.724224
Target:  5'- --cCGcGCGGCGg-GCGGGGCGUCCgGg -3'
miRNA:   3'- agaGC-UGCUGCagCGCCCUGUAGGgC- -5'
23773 3' -57.5 NC_005261.1 + 2072 0.69 0.714542
Target:  5'- aCUCGACcGCGcCGCGGaaGGCcagGUCCCGc -3'
miRNA:   3'- aGAGCUGcUGCaGCGCC--CUG---UAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 15063 0.69 0.691047
Target:  5'- gUCgCGGCGGgGUCGgGGGucaggcucgcccuCGUCCCGg -3'
miRNA:   3'- -AGaGCUGCUgCAGCgCCCu------------GUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 45041 0.68 0.798249
Target:  5'- cCUCuGCGAgGUCcgcgaaauccugGCGGGGCcgCCCa -3'
miRNA:   3'- aGAGcUGCUgCAG------------CGCCCUGuaGGGc -5'
23773 3' -57.5 NC_005261.1 + 18711 0.68 0.789409
Target:  5'- -gUCGGCGAagcagagaucguCGggCGCGGGGCGcCCCa -3'
miRNA:   3'- agAGCUGCU------------GCa-GCGCCCUGUaGGGc -5'
23773 3' -57.5 NC_005261.1 + 19020 0.68 0.789409
Target:  5'- ---gGugGucaGCGUCGCGGGGCAg-CCGg -3'
miRNA:   3'- agagCugC---UGCAGCGCCCUGUagGGC- -5'
23773 3' -57.5 NC_005261.1 + 106450 0.68 0.780434
Target:  5'- -gUCGGCcACGUcCGCGcGGGCGUCCa- -3'
miRNA:   3'- agAGCUGcUGCA-GCGC-CCUGUAGGgc -5'
23773 3' -57.5 NC_005261.1 + 87403 0.68 0.780434
Target:  5'- gUCUCGACGGCGccgUCGaCGGG-CG-CgCCGg -3'
miRNA:   3'- -AGAGCUGCUGC---AGC-GCCCuGUaG-GGC- -5'
23773 3' -57.5 NC_005261.1 + 30256 0.68 0.780434
Target:  5'- aCUCGACGcGCGgCGCGGcGGCccgcgcgCCCGc -3'
miRNA:   3'- aGAGCUGC-UGCaGCGCC-CUGua-----GGGC- -5'
23773 3' -57.5 NC_005261.1 + 23476 0.68 0.780434
Target:  5'- --gCGGCGGCGagugCGCGGGcCcgCCUGg -3'
miRNA:   3'- agaGCUGCUGCa---GCGCCCuGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 60929 0.68 0.771334
Target:  5'- --aCGGCGGCGaccCGCGGGcCGUggCCCGa -3'
miRNA:   3'- agaGCUGCUGCa--GCGCCCuGUA--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 59463 0.68 0.771334
Target:  5'- --cCG-CGGCGUCGgGGGGCAgCgCCGg -3'
miRNA:   3'- agaGCuGCUGCAGCgCCCUGUaG-GGC- -5'
23773 3' -57.5 NC_005261.1 + 2991 0.68 0.771334
Target:  5'- gCUCGGCcuGGCGgcccggCGcCGGGGC-UCCCGc -3'
miRNA:   3'- aGAGCUG--CUGCa-----GC-GCCCUGuAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 47157 0.68 0.76766
Target:  5'- -gUCGGCGGCcgagaccaccaGCGGGACG-CCCGg -3'
miRNA:   3'- agAGCUGCUGcag--------CGCCCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 109759 0.68 0.762114
Target:  5'- cUCcCGGCcgccGCGUCGCcgucucGGGCGUCCCGg -3'
miRNA:   3'- -AGaGCUGc---UGCAGCGc-----CCUGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 93563 0.68 0.762114
Target:  5'- -gUCGACGGCGgugCgGCGGGACGcgaUCgCGc -3'
miRNA:   3'- agAGCUGCUGCa--G-CGCCCUGU---AGgGC- -5'
23773 3' -57.5 NC_005261.1 + 49120 0.68 0.762114
Target:  5'- cCUCGagcGCGGCGg-GCGGGACc-CCCGc -3'
miRNA:   3'- aGAGC---UGCUGCagCGCCCUGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 83737 0.68 0.798249
Target:  5'- gCUUGACGGCGUCGaGGuGGCGgcgcgCCaCGg -3'
miRNA:   3'- aGAGCUGCUGCAGCgCC-CUGUa----GG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.