Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23773 | 3' | -57.5 | NC_005261.1 | + | 104818 | 0.75 | 0.392252 |
Target: 5'- gCUCcgcaGCGGCGUCGCGGGGCcgCgCCa -3' miRNA: 3'- aGAGc---UGCUGCAGCGCCCUGuaG-GGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 104275 | 0.73 | 0.507771 |
Target: 5'- gUCUCGGCGGCuG-CGCGGGccucGCAggCCCGc -3' miRNA: 3'- -AGAGCUGCUG-CaGCGCCC----UGUa-GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 103501 | 0.66 | 0.848013 |
Target: 5'- -gUCGuCGGCGcCGCGGacggcGGCGUCCgCGg -3' miRNA: 3'- agAGCuGCUGCaGCGCC-----CUGUAGG-GC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 103025 | 0.66 | 0.884435 |
Target: 5'- cUCUCGAagaACG-CGCGGGccGCAgggCCCa -3' miRNA: 3'- -AGAGCUgc-UGCaGCGCCC--UGUa--GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 94407 | 0.66 | 0.863182 |
Target: 5'- cCUCGacgaagggcGCGACGUcCGCGGcGCcgCCCc -3' miRNA: 3'- aGAGC---------UGCUGCA-GCGCCcUGuaGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 93563 | 0.68 | 0.762114 |
Target: 5'- -gUCGACGGCGgugCgGCGGGACGcgaUCgCGc -3' miRNA: 3'- agAGCUGCUGCa--G-CGCCCUGU---AGgGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 90886 | 0.66 | 0.870471 |
Target: 5'- gCUgGGCGACGgcauggCGCGGcAgGUCUCGg -3' miRNA: 3'- aGAgCUGCUGCa-----GCGCCcUgUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 88857 | 0.66 | 0.855694 |
Target: 5'- cCUgGGCcGCGccUCGCGGGACAgccUCuCCGu -3' miRNA: 3'- aGAgCUGcUGC--AGCGCCCUGU---AG-GGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 87403 | 0.68 | 0.780434 |
Target: 5'- gUCUCGACGGCGccgUCGaCGGG-CG-CgCCGg -3' miRNA: 3'- -AGAGCUGCUGC---AGC-GCCCuGUaG-GGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 84952 | 0.66 | 0.870471 |
Target: 5'- cCUCGGCGGCcgccgaggCGuCGGGcGCGUCCgCGa -3' miRNA: 3'- aGAGCUGCUGca------GC-GCCC-UGUAGG-GC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 83737 | 0.68 | 0.798249 |
Target: 5'- gCUUGACGGCGUCGaGGuGGCGgcgcgCCaCGg -3' miRNA: 3'- aGAGCUGCUGCAGCgCC-CUGUa----GG-GC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 71409 | 0.71 | 0.625382 |
Target: 5'- ---aGGCGGCGUccggCGCGGGGCccggCCCGg -3' miRNA: 3'- agagCUGCUGCA----GCGCCCUGua--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 71071 | 0.69 | 0.724224 |
Target: 5'- --cCGcGCGGCGg-GCGGGGCGUCCgGg -3' miRNA: 3'- agaGC-UGCUGCagCGCCCUGUAGGgC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 69178 | 0.7 | 0.685126 |
Target: 5'- cCUUGACGAgggcacCGUCGCGGacgcggccaacGACGUCCUc -3' miRNA: 3'- aGAGCUGCU------GCAGCGCC-----------CUGUAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 65352 | 0.66 | 0.877557 |
Target: 5'- --cCGuuGAUGaCGCGGGGCAUggCCCGc -3' miRNA: 3'- agaGCugCUGCaGCGCCCUGUA--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 64670 | 0.66 | 0.877557 |
Target: 5'- aCUCGucgcCGugGUgCGgcacCGGGcGCGUCCCGg -3' miRNA: 3'- aGAGCu---GCugCA-GC----GCCC-UGUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 63006 | 0.66 | 0.863182 |
Target: 5'- cCUCGGCGGCcgcgcccgCGCGGGcgccgGCG-CCCGc -3' miRNA: 3'- aGAGCUGCUGca------GCGCCC-----UGUaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 60929 | 0.68 | 0.771334 |
Target: 5'- --aCGGCGGCGaccCGCGGGcCGUggCCCGa -3' miRNA: 3'- agaGCUGCUGCa--GCGCCCuGUA--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 60840 | 0.66 | 0.863182 |
Target: 5'- aUCggcggCGGCGAgGUCGCGcgccGGGCcgagCCCGc -3' miRNA: 3'- -AGa----GCUGCUgCAGCGC----CCUGua--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 59463 | 0.68 | 0.771334 |
Target: 5'- --cCG-CGGCGUCGgGGGGCAgCgCCGg -3' miRNA: 3'- agaGCuGCUGCAGCgCCCUGUaG-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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