Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23773 | 3' | -57.5 | NC_005261.1 | + | 104275 | 0.73 | 0.507771 |
Target: 5'- gUCUCGGCGGCuG-CGCGGGccucGCAggCCCGc -3' miRNA: 3'- -AGAGCUGCUG-CaGCGCCC----UGUa-GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 39778 | 0.73 | 0.498336 |
Target: 5'- cCUCGAgGACGUCGCcggGGGGCggCgCGg -3' miRNA: 3'- aGAGCUgCUGCAGCG---CCCUGuaGgGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 11014 | 0.73 | 0.479706 |
Target: 5'- cCUCGACGGCcucGUCGcCGGGccCGUCCCc -3' miRNA: 3'- aGAGCUGCUG---CAGC-GCCCu-GUAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 106644 | 0.75 | 0.40891 |
Target: 5'- gCUCGGCGACGUCGCGcucgccggcgcGGuCGUCCa- -3' miRNA: 3'- aGAGCUGCUGCAGCGC-----------CCuGUAGGgc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 104818 | 0.75 | 0.392252 |
Target: 5'- gCUCcgcaGCGGCGUCGCGGGGCcgCgCCa -3' miRNA: 3'- aGAGc---UGCUGCAGCGCCCUGuaG-GGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 130256 | 0.7 | 0.655334 |
Target: 5'- --gCGGCu-CGUacUGCGGGGCGUCCCGc -3' miRNA: 3'- agaGCUGcuGCA--GCGCCCUGUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 3892 | 0.7 | 0.665293 |
Target: 5'- gCUCGGCGAgCGcggCGCGGG-CG-CCCGc -3' miRNA: 3'- aGAGCUGCU-GCa--GCGCCCuGUaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 109759 | 0.68 | 0.762114 |
Target: 5'- cUCcCGGCcgccGCGUCGCcgucucGGGCGUCCCGg -3' miRNA: 3'- -AGaGCUGc---UGCAGCGc-----CCUGUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 93563 | 0.68 | 0.762114 |
Target: 5'- -gUCGACGGCGgugCgGCGGGACGcgaUCgCGc -3' miRNA: 3'- agAGCUGCUGCa--G-CGCCCUGU---AGgGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 49120 | 0.68 | 0.762114 |
Target: 5'- cCUCGagcGCGGCGg-GCGGGACc-CCCGc -3' miRNA: 3'- aGAGC---UGCUGCagCGCCCUGuaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 115771 | 0.68 | 0.752785 |
Target: 5'- gUCUCGGCGGCGUCGaCGuacGCGUagCCCa -3' miRNA: 3'- -AGAGCUGCUGCAGC-GCcc-UGUA--GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 27450 | 0.69 | 0.733831 |
Target: 5'- gUUUGGCGGCGggccgcccCGCGGGGCGggcaggCCCu -3' miRNA: 3'- aGAGCUGCUGCa-------GCGCCCUGUa-----GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 16430 | 0.69 | 0.724224 |
Target: 5'- cCUCGACGGCGg-GCGGcGGCucguagCCCu -3' miRNA: 3'- aGAGCUGCUGCagCGCC-CUGua----GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 71071 | 0.69 | 0.724224 |
Target: 5'- --cCGcGCGGCGg-GCGGGGCGUCCgGg -3' miRNA: 3'- agaGC-UGCUGCagCGCCCUGUAGGgC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 2072 | 0.69 | 0.714542 |
Target: 5'- aCUCGACcGCGcCGCGGaaGGCcagGUCCCGc -3' miRNA: 3'- aGAGCUGcUGCaGCGCC--CUG---UAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 15063 | 0.69 | 0.691047 |
Target: 5'- gUCgCGGCGGgGUCGgGGGucaggcucgcccuCGUCCCGg -3' miRNA: 3'- -AGaGCUGCUgCAGCgCCCu------------GUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 69178 | 0.7 | 0.685126 |
Target: 5'- cCUUGACGAgggcacCGUCGCGGacgcggccaacGACGUCCUc -3' miRNA: 3'- aGAGCUGCU------GCAGCGCC-----------CUGUAGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 24390 | 0.7 | 0.675226 |
Target: 5'- gCUCGuCGGCG--GCGGGGCgGUCCUGg -3' miRNA: 3'- aGAGCuGCUGCagCGCCCUG-UAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 32384 | 0.7 | 0.675226 |
Target: 5'- ---aGGCG-CGgCGCGGcGGCGUCCCGg -3' miRNA: 3'- agagCUGCuGCaGCGCC-CUGUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 45005 | 0.7 | 0.665293 |
Target: 5'- gCUCGAUGACcUCGUGuGGAacgcgGUCCCGc -3' miRNA: 3'- aGAGCUGCUGcAGCGC-CCUg----UAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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