miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 3' -57.5 NC_005261.1 + 88857 0.66 0.855694
Target:  5'- cCUgGGCcGCGccUCGCGGGACAgccUCuCCGu -3'
miRNA:   3'- aGAgCUGcUGC--AGCGCCCUGU---AG-GGC- -5'
23773 3' -57.5 NC_005261.1 + 14440 0.66 0.855694
Target:  5'- aCUCGGCu-CGcUCGCGGGGCG-CgCGg -3'
miRNA:   3'- aGAGCUGcuGC-AGCGCCCUGUaGgGC- -5'
23773 3' -57.5 NC_005261.1 + 127051 0.66 0.855694
Target:  5'- cCUCGAUGGCGUCGUacGGGuCcaugGUgCCGc -3'
miRNA:   3'- aGAGCUGCUGCAGCG--CCCuG----UAgGGC- -5'
23773 3' -57.5 NC_005261.1 + 56186 0.66 0.848013
Target:  5'- ---gGACGACG-CGCGGG-C-UCCCu -3'
miRNA:   3'- agagCUGCUGCaGCGCCCuGuAGGGc -5'
23773 3' -57.5 NC_005261.1 + 103501 0.66 0.848013
Target:  5'- -gUCGuCGGCGcCGCGGacggcGGCGUCCgCGg -3'
miRNA:   3'- agAGCuGCUGCaGCGCC-----CUGUAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 125329 0.66 0.848013
Target:  5'- cCUCGGCGuccgcaGCG-CGCaGGGCGUCCa- -3'
miRNA:   3'- aGAGCUGC------UGCaGCGcCCUGUAGGgc -5'
23773 3' -57.5 NC_005261.1 + 32497 0.67 0.840146
Target:  5'- --gCGACGGCGgcaUCgGCGGGGgGUCCgCGc -3'
miRNA:   3'- agaGCUGCUGC---AG-CGCCCUgUAGG-GC- -5'
23773 3' -57.5 NC_005261.1 + 1412 0.67 0.840146
Target:  5'- --gCGGCGGCGgCG-GGGGCGgcgCCCGc -3'
miRNA:   3'- agaGCUGCUGCaGCgCCCUGUa--GGGC- -5'
23773 3' -57.5 NC_005261.1 + 15879 0.67 0.832098
Target:  5'- gCUCGAgucgcCGACG-CGCGGGcGCuuuaucUCCCGc -3'
miRNA:   3'- aGAGCU-----GCUGCaGCGCCC-UGu-----AGGGC- -5'
23773 3' -57.5 NC_005261.1 + 107368 0.67 0.832098
Target:  5'- -gUCGugGGCG-C-CGGGGCG-CCCGc -3'
miRNA:   3'- agAGCugCUGCaGcGCCCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 131925 0.67 0.823877
Target:  5'- uUUUUGGCG-CG-CGCGGGACcgcggugCCCGc -3'
miRNA:   3'- -AGAGCUGCuGCaGCGCCCUGua-----GGGC- -5'
23773 3' -57.5 NC_005261.1 + 13854 0.67 0.823877
Target:  5'- cCUCGucgcCGGCGUCGCcGG-CggCCCGg -3'
miRNA:   3'- aGAGCu---GCUGCAGCGcCCuGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 17047 0.67 0.823877
Target:  5'- cCUCGACGGgcUGcUCGCGGc-CGUCCUGg -3'
miRNA:   3'- aGAGCUGCU--GC-AGCGCCcuGUAGGGC- -5'
23773 3' -57.5 NC_005261.1 + 113592 0.67 0.81549
Target:  5'- gCUgGGCGACcUCGCGcccGGGCA-CCCGc -3'
miRNA:   3'- aGAgCUGCUGcAGCGC---CCUGUaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 110481 0.67 0.806945
Target:  5'- cUCUCGugGACcaCGCaGGACAagCUGg -3'
miRNA:   3'- -AGAGCugCUGcaGCGcCCUGUagGGC- -5'
23773 3' -57.5 NC_005261.1 + 56576 0.67 0.806945
Target:  5'- cCUCGGCGGCGacgacgGCGcGGACccCCCGc -3'
miRNA:   3'- aGAGCUGCUGCag----CGC-CCUGuaGGGC- -5'
23773 3' -57.5 NC_005261.1 + 45041 0.68 0.798249
Target:  5'- cCUCuGCGAgGUCcgcgaaauccugGCGGGGCcgCCCa -3'
miRNA:   3'- aGAGcUGCUgCAG------------CGCCCUGuaGGGc -5'
23773 3' -57.5 NC_005261.1 + 83737 0.68 0.798249
Target:  5'- gCUUGACGGCGUCGaGGuGGCGgcgcgCCaCGg -3'
miRNA:   3'- aGAGCUGCUGCAGCgCC-CUGUa----GG-GC- -5'
23773 3' -57.5 NC_005261.1 + 19020 0.68 0.789409
Target:  5'- ---gGugGucaGCGUCGCGGGGCAg-CCGg -3'
miRNA:   3'- agagCugC---UGCAGCGCCCUGUagGGC- -5'
23773 3' -57.5 NC_005261.1 + 18711 0.68 0.789409
Target:  5'- -gUCGGCGAagcagagaucguCGggCGCGGGGCGcCCCa -3'
miRNA:   3'- agAGCUGCU------------GCa-GCGCCCUGUaGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.