miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 78051 0.68 0.645474
Target:  5'- --gGUGGUCGCggGCCCGgcccccgcgccggccCAGGCGCUGGc -3'
miRNA:   3'- aagUACCAGUG--CGGGC---------------GUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 79221 0.67 0.692084
Target:  5'- -aCAcGGUCgagagcgcgGCGCCCGCGG-CGCCc- -3'
miRNA:   3'- aaGUaCCAG---------UGCGGGCGUCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 81435 0.66 0.770124
Target:  5'- gUCGUcGGcCGC-CCCGCggcGGGCGCCGc -3'
miRNA:   3'- aAGUA-CCaGUGcGGGCG---UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 84971 0.66 0.779426
Target:  5'- gUCG-GG-CGCGUCCGCGauGCGCCGGc -3'
miRNA:   3'- aAGUaCCaGUGCGGGCGUc-UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 87417 0.71 0.472876
Target:  5'- gUCGacgGG-CGCGCCgGCgaAGGCGCCGAa -3'
miRNA:   3'- aAGUa--CCaGUGCGGgCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 89188 0.71 0.482274
Target:  5'- ---cUGGagC-CGCUCGCGGGCGCCGAg -3'
miRNA:   3'- aaguACCa-GuGCGGGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 90066 0.73 0.384528
Target:  5'- ----cGG-CGC-CCCGCGGGCGCCGAg -3'
miRNA:   3'- aaguaCCaGUGcGGGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 91395 0.68 0.651584
Target:  5'- -aCGUGaucGUCGCGCCCGgcgaGGACGUgGAg -3'
miRNA:   3'- aaGUAC---CAGUGCGGGCg---UCUGCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 93669 0.66 0.779426
Target:  5'- ----cGGUCcgcgggcggcgGCGCCgGCgGGGCGCCGGc -3'
miRNA:   3'- aaguaCCAG-----------UGCGGgCG-UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 93928 0.67 0.721969
Target:  5'- ----cGGgcuugCGcCGUCCGCGGGCGCCGc -3'
miRNA:   3'- aaguaCCa----GU-GCGGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 94315 0.66 0.738613
Target:  5'- -cCAgggGGgcgccagcccgaacUCGCGCCgGUAGGCGUCGAu -3'
miRNA:   3'- aaGUa--CC--------------AGUGCGGgCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 95130 0.75 0.280583
Target:  5'- cUCAUGGcUCGCGUCCGCcugcuGGuCGCCGGg -3'
miRNA:   3'- aAGUACC-AGUGCGGGCG-----UCuGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 97113 0.66 0.731789
Target:  5'- -gCcgGGcCGCGgCCGgAGGCGCCGn -3'
miRNA:   3'- aaGuaCCaGUGCgGGCgUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 97137 0.68 0.641399
Target:  5'- ----cGGcCACGCUCGgAGGCGCUGGc -3'
miRNA:   3'- aaguaCCaGUGCGGGCgUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 97215 0.68 0.641399
Target:  5'- ----cGGcCACGCUCGgAGGCGCUGGc -3'
miRNA:   3'- aaguaCCaGUGCGGGCgUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 101529 0.67 0.671898
Target:  5'- gUCGcGGUCGCGCgCCGCcucGGcCGCCa- -3'
miRNA:   3'- aAGUaCCAGUGCG-GGCG---UCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 102445 0.68 0.61796
Target:  5'- ----cGG-CGCGCCgcccggccucggcgCGCAGGCGCCGGa -3'
miRNA:   3'- aaguaCCaGUGCGG--------------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 103181 0.66 0.731789
Target:  5'- ----cGGUCcugcACGCCCGCGGucACGCgCGGc -3'
miRNA:   3'- aaguaCCAG----UGCGGGCGUC--UGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 104152 0.7 0.530518
Target:  5'- ----aGGUCGgccaccgcgcCGUCCGCGGGCGCCGc -3'
miRNA:   3'- aaguaCCAGU----------GCGGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 104831 0.66 0.741524
Target:  5'- gUCGcggGGcCGCGCCaCGCGGACcGCgCGGg -3'
miRNA:   3'- aAGUa--CCaGUGCGG-GCGUCUG-CG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.