miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 106790 0.67 0.692084
Target:  5'- -gCGccGUCuGCGCCCGCAccaGCGCCGAg -3'
miRNA:   3'- aaGUacCAG-UGCGGGCGUc--UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 110001 0.83 0.081234
Target:  5'- gUCGUGGaCACGCCCGCcGGCGCCGc -3'
miRNA:   3'- aAGUACCaGUGCGGGCGuCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 110114 0.69 0.600667
Target:  5'- ----cGG-CGCGCCCGUccuGACGCUGAc -3'
miRNA:   3'- aaguaCCaGUGCGGGCGu--CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 112138 0.69 0.58041
Target:  5'- -gCAgcuaGUCGUGCCCGC-GACGCCGAu -3'
miRNA:   3'- aaGUac--CAGUGCGGGCGuCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 112802 0.66 0.751165
Target:  5'- -aCAUGGaCACGgCCGgGGACGCg-- -3'
miRNA:   3'- aaGUACCaGUGCgGGCgUCUGCGgcu -5'
23773 5' -58.7 NC_005261.1 + 114356 0.7 0.550315
Target:  5'- -gCGUGGcCGCGgCCGaguCGGugGCCGAg -3'
miRNA:   3'- aaGUACCaGUGCgGGC---GUCugCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 115396 0.67 0.702107
Target:  5'- cUUCAgcgGGUCGuCGaCCGCGGGCggcaGCCGGg -3'
miRNA:   3'- -AAGUa--CCAGU-GCgGGCGUCUG----CGGCU- -5'
23773 5' -58.7 NC_005261.1 + 116069 0.66 0.741524
Target:  5'- -gCGUGG-CGCGCCggucccCGUGGAUGCCGc -3'
miRNA:   3'- aaGUACCaGUGCGG------GCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 116168 0.69 0.560299
Target:  5'- ----cGGUCGCGgCCGCGuccccGACGCCGc -3'
miRNA:   3'- aaguaCCAGUGCgGGCGU-----CUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 116867 0.66 0.779426
Target:  5'- uUUCAgUGGgccCcCGCCCGCgaGGACGCgCGGg -3'
miRNA:   3'- -AAGU-ACCa--GuGCGGGCG--UCUGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 117212 0.74 0.314938
Target:  5'- ----cGG-CGCGCCCGCugccuGGGCGCCGAg -3'
miRNA:   3'- aaguaCCaGUGCGGGCG-----UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 118128 0.67 0.689067
Target:  5'- ----cGGcUCGCGCCgcucggccggcucgCGCAGACGCUGGc -3'
miRNA:   3'- aaguaCC-AGUGCGG--------------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 119785 0.68 0.661753
Target:  5'- ----cGGUCGCGUaCCGCAG-CGCgGAg -3'
miRNA:   3'- aaguaCCAGUGCG-GGCGUCuGCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 120591 0.72 0.436251
Target:  5'- gUCGUGGcCGuCGCCUGCGGccucgGCGCCGu -3'
miRNA:   3'- aAGUACCaGU-GCGGGCGUC-----UGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 121696 0.69 0.590523
Target:  5'- ----aGGUUGCGCauggaggCGUAGACGCCGAc -3'
miRNA:   3'- aaguaCCAGUGCGg------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 122331 0.7 0.520717
Target:  5'- gUCA-GGUgGCGCUCGCAGAgcuCGCCu- -3'
miRNA:   3'- aAGUaCCAgUGCGGGCGUCU---GCGGcu -5'
23773 5' -58.7 NC_005261.1 + 125273 0.66 0.760701
Target:  5'- gUCcgGGggccgCugGaagucaggCCGCGGGCGCCGGa -3'
miRNA:   3'- aAGuaCCa----GugCg-------GGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 127317 0.7 0.550315
Target:  5'- --gGUGGggcccugC-CGCCCGCGGGgGCCGGa -3'
miRNA:   3'- aagUACCa------GuGCGGGCGUCUgCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 127469 0.66 0.731789
Target:  5'- cUUCGgggGGUCAgaGUCC-CAGACGCUGGc -3'
miRNA:   3'- -AAGUa--CCAGUg-CGGGcGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 131213 0.67 0.692084
Target:  5'- ----cGG-CGCGCCCGCGuacGugGCCGc -3'
miRNA:   3'- aaguaCCaGUGCGGGCGU---CugCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.