miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 81435 0.66 0.770124
Target:  5'- gUCGUcGGcCGC-CCCGCggcGGGCGCCGc -3'
miRNA:   3'- aAGUA-CCaGUGcGGGCG---UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 79221 0.67 0.692084
Target:  5'- -aCAcGGUCgagagcgcgGCGCCCGCGG-CGCCc- -3'
miRNA:   3'- aaGUaCCAG---------UGCGGGCGUCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 78051 0.68 0.645474
Target:  5'- --gGUGGUCGCggGCCCGgcccccgcgccggccCAGGCGCUGGc -3'
miRNA:   3'- aagUACCAGUG--CGGGC---------------GUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 77630 0.67 0.682011
Target:  5'- aUCAUGGccCugGCCgGCGccauCGCCGAc -3'
miRNA:   3'- aAGUACCa-GugCGGgCGUcu--GCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 77256 0.67 0.682011
Target:  5'- cUCAaaagGG-CGCGCUCGCGGGCGgCGu -3'
miRNA:   3'- aAGUa---CCaGUGCGGGCGUCUGCgGCu -5'
23773 5' -58.7 NC_005261.1 + 76441 0.68 0.621016
Target:  5'- -cCAUGGcggaCGCGCCCGaCGGcgacggcgGCGCCGGc -3'
miRNA:   3'- aaGUACCa---GUGCGGGC-GUC--------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 75831 0.67 0.721969
Target:  5'- ----cGGcCGCGCCCGgGGaggggcgcgcgGCGCCGAc -3'
miRNA:   3'- aaguaCCaGUGCGGGCgUC-----------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 75661 0.69 0.590523
Target:  5'- gUUCcUGG-CGCGCgCGCAGAaccucuuccuCGCCGAg -3'
miRNA:   3'- -AAGuACCaGUGCGgGCGUCU----------GCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 75591 0.67 0.712071
Target:  5'- ----cGGcgcucgCGCGCgCCGCGGACGCgGAc -3'
miRNA:   3'- aaguaCCa-----GUGCG-GGCGUCUGCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 68744 0.66 0.731789
Target:  5'- ----cGGgaagaaGCGCCCGCcgGGGCGCCGc -3'
miRNA:   3'- aaguaCCag----UGCGGGCG--UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 68652 0.66 0.770124
Target:  5'- gUCAUcGUCAccgcCGCCCGC-GcCGCCGGc -3'
miRNA:   3'- aAGUAcCAGU----GCGGGCGuCuGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 68617 0.68 0.621016
Target:  5'- -gCGUGGgggaggaugCGCGCCCGCccGCGaCCGAg -3'
miRNA:   3'- aaGUACCa--------GUGCGGGCGucUGC-GGCU- -5'
23773 5' -58.7 NC_005261.1 + 68072 0.72 0.436251
Target:  5'- --gGUGGUCucgguCGCCCGCGGGgGCgGGg -3'
miRNA:   3'- aagUACCAGu----GCGGGCGUCUgCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 63007 0.76 0.243367
Target:  5'- cUCGgcGGcCGCGCCCGCgcGGGCGCCGGc -3'
miRNA:   3'- aAGUa-CCaGUGCGGGCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 62399 0.68 0.606765
Target:  5'- gUCGUGGggaagagcagcucCGCGCCCGCcGAgGCCa- -3'
miRNA:   3'- aAGUACCa------------GUGCGGGCGuCUgCGGcu -5'
23773 5' -58.7 NC_005261.1 + 62281 0.66 0.751165
Target:  5'- gUUGUGGUacaucacgucgGCGCCgCGCGGGCGCgCGGc -3'
miRNA:   3'- aAGUACCAg----------UGCGG-GCGUCUGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 60106 0.66 0.731789
Target:  5'- ---cUGGccagCGCGCCCGCGGGCacguagGCCGc -3'
miRNA:   3'- aaguACCa---GUGCGGGCGUCUG------CGGCu -5'
23773 5' -58.7 NC_005261.1 + 59427 0.67 0.682011
Target:  5'- -----uGUCGCgcgGCCCgGCAGGCGCCGGc -3'
miRNA:   3'- aaguacCAGUG---CGGG-CGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 59367 0.66 0.780349
Target:  5'- ----gGGUguCGCCCGCcagcgcccgcgccacGGCGCCGAg -3'
miRNA:   3'- aaguaCCAguGCGGGCGu--------------CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 59140 0.66 0.760701
Target:  5'- cUCAggccGG-CGCGCCC-CGGGCGCgCGGc -3'
miRNA:   3'- aAGUa---CCaGUGCGGGcGUCUGCG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.