miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 117212 0.74 0.314938
Target:  5'- ----cGG-CGCGCCCGCugccuGGGCGCCGAg -3'
miRNA:   3'- aaguaCCaGUGCGGGCG-----UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 44304 0.74 0.30782
Target:  5'- -cCAgGGcCGCuGCCCGCGGGCGCCGc -3'
miRNA:   3'- aaGUaCCaGUG-CGGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 95130 0.75 0.280583
Target:  5'- cUCAUGGcUCGCGUCCGCcugcuGGuCGCCGGg -3'
miRNA:   3'- aAGUACC-AGUGCGGGCG-----UCuGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 63007 0.76 0.243367
Target:  5'- cUCGgcGGcCGCGCCCGCgcGGGCGCCGGc -3'
miRNA:   3'- aAGUa-CCaGUGCGGGCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 132582 0.78 0.185852
Target:  5'- -aCGUcGG-CGCGCCCGCGGACGCCc- -3'
miRNA:   3'- aaGUA-CCaGUGCGGGCGUCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 48054 0.7 0.510987
Target:  5'- ----cGGUCgGgGCCCGCGGcccACGCCGAg -3'
miRNA:   3'- aaguaCCAG-UgCGGGCGUC---UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 122331 0.7 0.520717
Target:  5'- gUCA-GGUgGCGCUCGCAGAgcuCGCCu- -3'
miRNA:   3'- aAGUaCCAgUGCGGGCGUCU---GCGGcu -5'
23773 5' -58.7 NC_005261.1 + 68617 0.68 0.621016
Target:  5'- -gCGUGGgggaggaugCGCGCCCGCccGCGaCCGAg -3'
miRNA:   3'- aaGUACCa--------GUGCGGGCGucUGC-GGCU- -5'
23773 5' -58.7 NC_005261.1 + 102445 0.68 0.61796
Target:  5'- ----cGG-CGCGCCgcccggccucggcgCGCAGGCGCCGGa -3'
miRNA:   3'- aaguaCCaGUGCGG--------------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 62399 0.68 0.606765
Target:  5'- gUCGUGGggaagagcagcucCGCGCCCGCcGAgGCCa- -3'
miRNA:   3'- aAGUACCa------------GUGCGGGCGuCUgCGGcu -5'
23773 5' -58.7 NC_005261.1 + 110114 0.69 0.600667
Target:  5'- ----cGG-CGCGCCCGUccuGACGCUGAc -3'
miRNA:   3'- aaguaCCaGUGCGGGCGu--CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 21622 0.69 0.600667
Target:  5'- cUUCGggcgagGGUCccCGCCCcggcGCGGACGCCGc -3'
miRNA:   3'- -AAGUa-----CCAGu-GCGGG----CGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 75661 0.69 0.590523
Target:  5'- gUUCcUGG-CGCGCgCGCAGAaccucuuccuCGCCGAg -3'
miRNA:   3'- -AAGuACCaGUGCGgGCGUCU----------GCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 121696 0.69 0.590523
Target:  5'- ----aGGUUGCGCauggaggCGUAGACGCCGAc -3'
miRNA:   3'- aaguaCCAGUGCGg------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 112138 0.69 0.58041
Target:  5'- -gCAgcuaGUCGUGCCCGC-GACGCCGAu -3'
miRNA:   3'- aaGUac--CAGUGCGGGCGuCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 116168 0.69 0.560299
Target:  5'- ----cGGUCGCGgCCGCGuccccGACGCCGc -3'
miRNA:   3'- aaguaCCAGUGCgGGCGU-----CUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 30274 0.69 0.560299
Target:  5'- ----cGGcccgCGCGCCCGCcuGGACGCUGGc -3'
miRNA:   3'- aaguaCCa---GUGCGGGCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 114356 0.7 0.550315
Target:  5'- -gCGUGGcCGCGgCCGaguCGGugGCCGAg -3'
miRNA:   3'- aaGUACCaGUGCgGGC---GUCugCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 127317 0.7 0.550315
Target:  5'- --gGUGGggcccugC-CGCCCGCGGGgGCCGGa -3'
miRNA:   3'- aagUACCa------GuGCGGGCGUCUgCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 104152 0.7 0.530518
Target:  5'- ----aGGUCGgccaccgcgcCGUCCGCGGGCGCCGc -3'
miRNA:   3'- aaguaCCAGU----------GCGGGCGUCUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.