miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 116069 0.66 0.741524
Target:  5'- -gCGUGG-CGCGCCggucccCGUGGAUGCCGc -3'
miRNA:   3'- aaGUACCaGUGCGG------GCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 94315 0.66 0.738613
Target:  5'- -cCAgggGGgcgccagcccgaacUCGCGCCgGUAGGCGUCGAu -3'
miRNA:   3'- aaGUa--CC--------------AGUGCGGgCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 127469 0.66 0.731789
Target:  5'- cUUCGgggGGUCAgaGUCC-CAGACGCUGGc -3'
miRNA:   3'- -AAGUa--CCAGUg-CGGGcGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 103181 0.66 0.731789
Target:  5'- ----cGGUCcugcACGCCCGCGGucACGCgCGGc -3'
miRNA:   3'- aaguaCCAG----UGCGGGCGUC--UGCG-GCU- -5'
23773 5' -58.7 NC_005261.1 + 97113 0.66 0.731789
Target:  5'- -gCcgGGcCGCGgCCGgAGGCGCCGn -3'
miRNA:   3'- aaGuaCCaGUGCgGGCgUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 60106 0.66 0.731789
Target:  5'- ---cUGGccagCGCGCCCGCGGGCacguagGCCGc -3'
miRNA:   3'- aaguACCa---GUGCGGGCGUCUG------CGGCu -5'
23773 5' -58.7 NC_005261.1 + 68744 0.66 0.731789
Target:  5'- ----cGGgaagaaGCGCCCGCcgGGGCGCCGc -3'
miRNA:   3'- aaguaCCag----UGCGGGCG--UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 30346 0.66 0.728851
Target:  5'- ----cGGcCGCGCUCGCGGcccugaaggccggcGCGCCGGg -3'
miRNA:   3'- aaguaCCaGUGCGGGCGUC--------------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 43273 0.67 0.721969
Target:  5'- gUUCGggGcGUCGCGgCCGCcuuucccgcgggGGGCGCCGGc -3'
miRNA:   3'- -AAGUa-C-CAGUGCgGGCG------------UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 75831 0.67 0.721969
Target:  5'- ----cGGcCGCGCCCGgGGaggggcgcgcgGCGCCGAc -3'
miRNA:   3'- aaguaCCaGUGCGGGCgUC-----------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 93928 0.67 0.721969
Target:  5'- ----cGGgcuugCGcCGUCCGCGGGCGCCGc -3'
miRNA:   3'- aaguaCCa----GU-GCGGGCGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 5249 0.67 0.721969
Target:  5'- -gCGUGGccggcUCGUGCCCGCcgggAGACGCCa- -3'
miRNA:   3'- aaGUACC-----AGUGCGGGCG----UCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 75591 0.67 0.712071
Target:  5'- ----cGGcgcucgCGCGCgCCGCGGACGCgGAc -3'
miRNA:   3'- aaguaCCa-----GUGCG-GGCGUCUGCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 133883 0.67 0.712071
Target:  5'- --uGUGGUCugcgcaaGCCCGCGGcGCGCUGc -3'
miRNA:   3'- aagUACCAGug-----CGGGCGUC-UGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 115396 0.67 0.702107
Target:  5'- cUUCAgcgGGUCGuCGaCCGCGGGCggcaGCCGGg -3'
miRNA:   3'- -AAGUa--CCAGU-GCgGGCGUCUG----CGGCU- -5'
23773 5' -58.7 NC_005261.1 + 106790 0.67 0.692084
Target:  5'- -gCGccGUCuGCGCCCGCAccaGCGCCGAg -3'
miRNA:   3'- aaGUacCAG-UGCGGGCGUc--UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 131213 0.67 0.692084
Target:  5'- ----cGG-CGCGCCCGCGuacGugGCCGc -3'
miRNA:   3'- aaguaCCaGUGCGGGCGU---CugCGGCu -5'
23773 5' -58.7 NC_005261.1 + 79221 0.67 0.692084
Target:  5'- -aCAcGGUCgagagcgcgGCGCCCGCGG-CGCCc- -3'
miRNA:   3'- aaGUaCCAG---------UGCGGGCGUCuGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 118128 0.67 0.689067
Target:  5'- ----cGGcUCGCGCCgcucggccggcucgCGCAGACGCUGGc -3'
miRNA:   3'- aaguaCC-AGUGCGG--------------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 43774 0.67 0.682011
Target:  5'- cUCGUGGggcggCGCGCggagggcgCCGCgggugaggGGGCGCCGGg -3'
miRNA:   3'- aAGUACCa----GUGCG--------GGCG--------UCUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.