miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23774 3' -55.4 NC_005261.1 + 118877 0.74 0.467697
Target:  5'- cUGgcCUCGGCCAccgcggGCGCGcuGGUGGCc -3'
miRNA:   3'- uACauGAGCUGGUa-----CGCGCu-CCACCG- -5'
23774 3' -55.4 NC_005261.1 + 54150 0.74 0.486862
Target:  5'- ---cACgCGGCCGUGCGCGGGGUuGCc -3'
miRNA:   3'- uacaUGaGCUGGUACGCGCUCCAcCG- -5'
23774 3' -55.4 NC_005261.1 + 59773 0.73 0.516279
Target:  5'- cAUGUGCUCGGCCGca-GCGAcGGcGGCg -3'
miRNA:   3'- -UACAUGAGCUGGUacgCGCU-CCaCCG- -5'
23774 3' -55.4 NC_005261.1 + 99955 0.73 0.516279
Target:  5'- cAUGUACUCGugCuucUGCaCGAGGUccaGGCg -3'
miRNA:   3'- -UACAUGAGCugGu--ACGcGCUCCA---CCG- -5'
23774 3' -55.4 NC_005261.1 + 108065 0.73 0.526245
Target:  5'- -gGUGgUCGugUAgUGCGCGAGGUagucGGCg -3'
miRNA:   3'- uaCAUgAGCugGU-ACGCGCUCCA----CCG- -5'
23774 3' -55.4 NC_005261.1 + 50628 0.73 0.526245
Target:  5'- -gGUGCUCcACgCggGCgGCGGGGUGGCg -3'
miRNA:   3'- uaCAUGAGcUG-GuaCG-CGCUCCACCG- -5'
23774 3' -55.4 NC_005261.1 + 112665 0.72 0.597674
Target:  5'- -aGUACgagCGGCUGgaGCGCGAGG-GGCu -3'
miRNA:   3'- uaCAUGa--GCUGGUa-CGCGCUCCaCCG- -5'
23774 3' -55.4 NC_005261.1 + 83731 0.72 0.608039
Target:  5'- -cGUuuaGCUUGACg--GCGuCGAGGUGGCg -3'
miRNA:   3'- uaCA---UGAGCUGguaCGC-GCUCCACCG- -5'
23774 3' -55.4 NC_005261.1 + 88950 0.71 0.639212
Target:  5'- gGUGUcCUCGGCCAgcGCGCGgcucGGG-GGCu -3'
miRNA:   3'- -UACAuGAGCUGGUa-CGCGC----UCCaCCG- -5'
23774 3' -55.4 NC_005261.1 + 49183 0.71 0.670333
Target:  5'- -gGUGCUCGGCCAgGCccucggccgacaGCGAGGgcgggaGGCc -3'
miRNA:   3'- uaCAUGAGCUGGUaCG------------CGCUCCa-----CCG- -5'
23774 3' -55.4 NC_005261.1 + 84866 0.7 0.680654
Target:  5'- cGUGgcCaUGACCGaGCGCacGAGGUGGCu -3'
miRNA:   3'- -UACauGaGCUGGUaCGCG--CUCCACCG- -5'
23774 3' -55.4 NC_005261.1 + 122622 0.7 0.690934
Target:  5'- cUGUGCUUGAacggCGaGCGCGAGGcccGGCg -3'
miRNA:   3'- uACAUGAGCUg---GUaCGCGCUCCa--CCG- -5'
23774 3' -55.4 NC_005261.1 + 76576 0.7 0.721433
Target:  5'- ---aGCUCGuCCucacGCGCGAgcgGGUGGCg -3'
miRNA:   3'- uacaUGAGCuGGua--CGCGCU---CCACCG- -5'
23774 3' -55.4 NC_005261.1 + 71201 0.7 0.731454
Target:  5'- ---gGCgCGGCCAgcUGCGCGAuGGUGcGCg -3'
miRNA:   3'- uacaUGaGCUGGU--ACGCGCU-CCAC-CG- -5'
23774 3' -55.4 NC_005261.1 + 47455 0.69 0.751221
Target:  5'- ---cGCcCGGCCcgcuUGCGCGGGGgcugGGCg -3'
miRNA:   3'- uacaUGaGCUGGu---ACGCGCUCCa---CCG- -5'
23774 3' -55.4 NC_005261.1 + 80661 0.69 0.770554
Target:  5'- gGUGUGCUCG-CgGUGCGCGccGUcGCg -3'
miRNA:   3'- -UACAUGAGCuGgUACGCGCucCAcCG- -5'
23774 3' -55.4 NC_005261.1 + 16153 0.69 0.771509
Target:  5'- --aUGC-CGACCGgcagggcaguaggggGCGCGGGcGUGGCg -3'
miRNA:   3'- uacAUGaGCUGGUa--------------CGCGCUC-CACCG- -5'
23774 3' -55.4 NC_005261.1 + 81187 0.69 0.779093
Target:  5'- -cGUACUCGgggcacgGCCGcgcggGCGCGAGccggaccaccGUGGCg -3'
miRNA:   3'- uaCAUGAGC-------UGGUa----CGCGCUC----------CACCG- -5'
23774 3' -55.4 NC_005261.1 + 102852 0.68 0.798576
Target:  5'- -cGUGCUgGGCCAgcaGCGCGuccAGGaaGGCg -3'
miRNA:   3'- uaCAUGAgCUGGUa--CGCGC---UCCa-CCG- -5'
23774 3' -55.4 NC_005261.1 + 51504 0.68 0.825202
Target:  5'- cUGaUGCUCGGCCAgaugcuggGCGCcGGGcuggGGCu -3'
miRNA:   3'- uAC-AUGAGCUGGUa-------CGCGcUCCa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.