Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23774 | 3' | -55.4 | NC_005261.1 | + | 51504 | 0.68 | 0.825202 |
Target: 5'- cUGaUGCUCGGCCAgaugcuggGCGCcGGGcuggGGCu -3' miRNA: 3'- uAC-AUGAGCUGGUa-------CGCGcUCCa---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 102852 | 0.68 | 0.798576 |
Target: 5'- -cGUGCUgGGCCAgcaGCGCGuccAGGaaGGCg -3' miRNA: 3'- uaCAUGAgCUGGUa--CGCGC---UCCa-CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 81187 | 0.69 | 0.779093 |
Target: 5'- -cGUACUCGgggcacgGCCGcgcggGCGCGAGccggaccaccGUGGCg -3' miRNA: 3'- uaCAUGAGC-------UGGUa----CGCGCUC----------CACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 16153 | 0.69 | 0.771509 |
Target: 5'- --aUGC-CGACCGgcagggcaguaggggGCGCGGGcGUGGCg -3' miRNA: 3'- uacAUGaGCUGGUa--------------CGCGCUC-CACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 80661 | 0.69 | 0.770554 |
Target: 5'- gGUGUGCUCG-CgGUGCGCGccGUcGCg -3' miRNA: 3'- -UACAUGAGCuGgUACGCGCucCAcCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 47455 | 0.69 | 0.751221 |
Target: 5'- ---cGCcCGGCCcgcuUGCGCGGGGgcugGGCg -3' miRNA: 3'- uacaUGaGCUGGu---ACGCGCUCCa---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 71201 | 0.7 | 0.731454 |
Target: 5'- ---gGCgCGGCCAgcUGCGCGAuGGUGcGCg -3' miRNA: 3'- uacaUGaGCUGGU--ACGCGCU-CCAC-CG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 76576 | 0.7 | 0.721433 |
Target: 5'- ---aGCUCGuCCucacGCGCGAgcgGGUGGCg -3' miRNA: 3'- uacaUGAGCuGGua--CGCGCU---CCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 122622 | 0.7 | 0.690934 |
Target: 5'- cUGUGCUUGAacggCGaGCGCGAGGcccGGCg -3' miRNA: 3'- uACAUGAGCUg---GUaCGCGCUCCa--CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 84866 | 0.7 | 0.680654 |
Target: 5'- cGUGgcCaUGACCGaGCGCacGAGGUGGCu -3' miRNA: 3'- -UACauGaGCUGGUaCGCG--CUCCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 49183 | 0.71 | 0.670333 |
Target: 5'- -gGUGCUCGGCCAgGCccucggccgacaGCGAGGgcgggaGGCc -3' miRNA: 3'- uaCAUGAGCUGGUaCG------------CGCUCCa-----CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 88950 | 0.71 | 0.639212 |
Target: 5'- gGUGUcCUCGGCCAgcGCGCGgcucGGG-GGCu -3' miRNA: 3'- -UACAuGAGCUGGUa-CGCGC----UCCaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 83731 | 0.72 | 0.608039 |
Target: 5'- -cGUuuaGCUUGACg--GCGuCGAGGUGGCg -3' miRNA: 3'- uaCA---UGAGCUGguaCGC-GCUCCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 112665 | 0.72 | 0.597674 |
Target: 5'- -aGUACgagCGGCUGgaGCGCGAGG-GGCu -3' miRNA: 3'- uaCAUGa--GCUGGUa-CGCGCUCCaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 108065 | 0.73 | 0.526245 |
Target: 5'- -gGUGgUCGugUAgUGCGCGAGGUagucGGCg -3' miRNA: 3'- uaCAUgAGCugGU-ACGCGCUCCA----CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 50628 | 0.73 | 0.526245 |
Target: 5'- -gGUGCUCcACgCggGCgGCGGGGUGGCg -3' miRNA: 3'- uaCAUGAGcUG-GuaCG-CGCUCCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 99955 | 0.73 | 0.516279 |
Target: 5'- cAUGUACUCGugCuucUGCaCGAGGUccaGGCg -3' miRNA: 3'- -UACAUGAGCugGu--ACGcGCUCCA---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 59773 | 0.73 | 0.516279 |
Target: 5'- cAUGUGCUCGGCCGca-GCGAcGGcGGCg -3' miRNA: 3'- -UACAUGAGCUGGUacgCGCU-CCaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 54150 | 0.74 | 0.486862 |
Target: 5'- ---cACgCGGCCGUGCGCGGGGUuGCc -3' miRNA: 3'- uacaUGaGCUGGUACGCGCUCCAcCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 118877 | 0.74 | 0.467697 |
Target: 5'- cUGgcCUCGGCCAccgcggGCGCGcuGGUGGCc -3' miRNA: 3'- uACauGAGCUGGUa-----CGCGCu-CCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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