Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23774 | 3' | -55.4 | NC_005261.1 | + | 1713 | 0.66 | 0.89046 |
Target: 5'- -gGUACUCGcgcggcggcacgggcACCgcgGUGCGCGGGcccaggcgcGUGGCc -3' miRNA: 3'- uaCAUGAGC---------------UGG---UACGCGCUC---------CACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 15429 | 0.66 | 0.880647 |
Target: 5'- ---gAgUCGGCCggGCGCGGGccGGCg -3' miRNA: 3'- uacaUgAGCUGGuaCGCGCUCcaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 16153 | 0.69 | 0.771509 |
Target: 5'- --aUGC-CGACCGgcagggcaguaggggGCGCGGGcGUGGCg -3' miRNA: 3'- uacAUGaGCUGGUa--------------CGCGCUC-CACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 35835 | 0.66 | 0.91356 |
Target: 5'- ---aGCUCGGCgCAgaaaaggcgGCGCaccgaaaugGAGGUGGCc -3' miRNA: 3'- uacaUGAGCUG-GUa--------CGCG---------CUCCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 41893 | 0.66 | 0.91356 |
Target: 5'- -cGUACUCG-CgCA-GCGUGGGGUugggauaaGGCa -3' miRNA: 3'- uaCAUGAGCuG-GUaCGCGCUCCA--------CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 46328 | 0.67 | 0.842062 |
Target: 5'- cUGcGCUUGGCCAUGCGCccaaacucGGUccGGCa -3' miRNA: 3'- uACaUGAGCUGGUACGCGcu------CCA--CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 46377 | 0.66 | 0.879929 |
Target: 5'- -aGUGCUCGcuCUcgGCGCcggccccgucgccGAcGGUGGCg -3' miRNA: 3'- uaCAUGAGCu-GGuaCGCG-------------CU-CCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 47455 | 0.69 | 0.751221 |
Target: 5'- ---cGCcCGGCCcgcuUGCGCGGGGgcugGGCg -3' miRNA: 3'- uacaUGaGCUGGu---ACGCGCUCCa---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 49183 | 0.71 | 0.670333 |
Target: 5'- -gGUGCUCGGCCAgGCccucggccgacaGCGAGGgcgggaGGCc -3' miRNA: 3'- uaCAUGAGCUGGUaCG------------CGCUCCa-----CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 50628 | 0.73 | 0.526245 |
Target: 5'- -gGUGCUCcACgCggGCgGCGGGGUGGCg -3' miRNA: 3'- uaCAUGAGcUG-GuaCG-CGCUCCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 51504 | 0.68 | 0.825202 |
Target: 5'- cUGaUGCUCGGCCAgaugcuggGCGCcGGGcuggGGCu -3' miRNA: 3'- uAC-AUGAGCUGGUa-------CGCGcUCCa---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 54150 | 0.74 | 0.486862 |
Target: 5'- ---cACgCGGCCGUGCGCGGGGUuGCc -3' miRNA: 3'- uacaUGaGCUGGUACGCGCUCCAcCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 59773 | 0.73 | 0.516279 |
Target: 5'- cAUGUGCUCGGCCGca-GCGAcGGcGGCg -3' miRNA: 3'- -UACAUGAGCUGGUacgCGCU-CCaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 59849 | 0.66 | 0.894525 |
Target: 5'- -aGgg--CGGCCAUGCGCGGGacGUcGGCc -3' miRNA: 3'- uaCaugaGCUGGUACGCGCUC--CA-CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 62801 | 0.67 | 0.842062 |
Target: 5'- aAUGUuucggGCUgGGCCAUaucgccGCGCGGGGcaccGGCg -3' miRNA: 3'- -UACA-----UGAgCUGGUA------CGCGCUCCa---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 69288 | 0.66 | 0.887702 |
Target: 5'- ---cGC-CGACCccgGCGCGGggcgccGGUGGCg -3' miRNA: 3'- uacaUGaGCUGGua-CGCGCU------CCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 71201 | 0.7 | 0.731454 |
Target: 5'- ---gGCgCGGCCAgcUGCGCGAuGGUGcGCg -3' miRNA: 3'- uacaUGaGCUGGU--ACGCGCU-CCAC-CG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 73700 | 0.66 | 0.901111 |
Target: 5'- ---gGCUCGGCCAUgGCGCaGGaccgcGGUcGGCg -3' miRNA: 3'- uacaUGAGCUGGUA-CGCG-CU-----CCA-CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 75264 | 0.67 | 0.842062 |
Target: 5'- -cGUACUCGGCCuucgaGUGCGCGGuGcUGuGCc -3' miRNA: 3'- uaCAUGAGCUGG-----UACGCGCUcC-AC-CG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 76576 | 0.7 | 0.721433 |
Target: 5'- ---aGCUCGuCCucacGCGCGAgcgGGUGGCg -3' miRNA: 3'- uacaUGAGCuGGua--CGCGCU---CCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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