Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23774 | 3' | -55.4 | NC_005261.1 | + | 79791 | 0.66 | 0.883497 |
Target: 5'- -aGUACgucaCGGCCAuggcgucccccaacaUGCGCGcGGcGGCg -3' miRNA: 3'- uaCAUGa---GCUGGU---------------ACGCGCuCCaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 80661 | 0.69 | 0.770554 |
Target: 5'- gGUGUGCUCG-CgGUGCGCGccGUcGCg -3' miRNA: 3'- -UACAUGAGCuGgUACGCGCucCAcCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 81187 | 0.69 | 0.779093 |
Target: 5'- -cGUACUCGgggcacgGCCGcgcggGCGCGAGccggaccaccGUGGCg -3' miRNA: 3'- uaCAUGAGC-------UGGUa----CGCGCUC----------CACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 83731 | 0.72 | 0.608039 |
Target: 5'- -cGUuuaGCUUGACg--GCGuCGAGGUGGCg -3' miRNA: 3'- uaCA---UGAGCUGguaCGC-GCUCCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 84866 | 0.7 | 0.680654 |
Target: 5'- cGUGgcCaUGACCGaGCGCacGAGGUGGCu -3' miRNA: 3'- -UACauGaGCUGGUaCGCG--CUCCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 85128 | 0.67 | 0.865095 |
Target: 5'- ---aGCUCGGCCAcguugcccgGCGUGAGGUugacguaguugauGGCc -3' miRNA: 3'- uacaUGAGCUGGUa--------CGCGCUCCA-------------CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 85915 | 0.68 | 0.833727 |
Target: 5'- gGUGgccUGCUCGACCGUGCucu-GGaUGGCg -3' miRNA: 3'- -UAC---AUGAGCUGGUACGcgcuCC-ACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 88950 | 0.71 | 0.639212 |
Target: 5'- gGUGUcCUCGGCCAgcGCGCGgcucGGG-GGCu -3' miRNA: 3'- -UACAuGAGCUGGUa-CGCGC----UCCaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 96697 | 0.66 | 0.907457 |
Target: 5'- -gGUACUggCGACCcaGCaGCGAGuUGGCg -3' miRNA: 3'- uaCAUGA--GCUGGuaCG-CGCUCcACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 99955 | 0.73 | 0.516279 |
Target: 5'- cAUGUACUCGugCuucUGCaCGAGGUccaGGCg -3' miRNA: 3'- -UACAUGAGCugGu--ACGcGCUCCA---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 102852 | 0.68 | 0.798576 |
Target: 5'- -cGUGCUgGGCCAgcaGCGCGuccAGGaaGGCg -3' miRNA: 3'- uaCAUGAgCUGGUa--CGCGC---UCCa-CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 108065 | 0.73 | 0.526245 |
Target: 5'- -gGUGgUCGugUAgUGCGCGAGGUagucGGCg -3' miRNA: 3'- uaCAUgAGCugGU-ACGCGCUCCA----CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 112174 | 0.66 | 0.880647 |
Target: 5'- ---cGC-CGGCCGcGCGCGGGGcucgcUGGCc -3' miRNA: 3'- uacaUGaGCUGGUaCGCGCUCC-----ACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 112665 | 0.72 | 0.597674 |
Target: 5'- -aGUACgagCGGCUGgaGCGCGAGG-GGCu -3' miRNA: 3'- uaCAUGa--GCUGGUa-CGCGCUCCaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 117093 | 0.66 | 0.901111 |
Target: 5'- -aGUACUCGAUCAUGCuccCGAcGcGcGGCg -3' miRNA: 3'- uaCAUGAGCUGGUACGc--GCU-C-CaCCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 118877 | 0.74 | 0.467697 |
Target: 5'- cUGgcCUCGGCCAccgcggGCGCGcuGGUGGCc -3' miRNA: 3'- uACauGAGCUGGUa-----CGCGCu-CCACCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 122622 | 0.7 | 0.690934 |
Target: 5'- cUGUGCUUGAacggCGaGCGCGAGGcccGGCg -3' miRNA: 3'- uACAUGAGCUg---GUaCGCGCUCCa--CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 123711 | 0.67 | 0.865858 |
Target: 5'- -cGUACUCGGCCAUcaGCaGCGucGUcGCg -3' miRNA: 3'- uaCAUGAGCUGGUA--CG-CGCucCAcCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 132531 | 0.66 | 0.91356 |
Target: 5'- -aGUACgagcgCGcCCucgcGCGCGAGGgcgaGGCg -3' miRNA: 3'- uaCAUGa----GCuGGua--CGCGCUCCa---CCG- -5' |
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23774 | 3' | -55.4 | NC_005261.1 | + | 133831 | 0.67 | 0.8502 |
Target: 5'- --cUGCgCGGCCgcGUGCGCGccGUGGCc -3' miRNA: 3'- uacAUGaGCUGG--UACGCGCucCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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