miRNA display CGI


Results 1 - 20 of 493 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23774 5' -58.1 NC_005261.1 + 74901 0.66 0.8531
Target:  5'- cGGCG-GCCCGC--GCUggcCGCGCGg -3'
miRNA:   3'- cCUGCuCGGGCGgcUGAaa-GCGCGCg -5'
23774 5' -58.1 NC_005261.1 + 117228 0.66 0.8531
Target:  5'- uGGGCgccGAGUCCGCCucgggucgGGuCUcgUUCGCcGCGCg -3'
miRNA:   3'- -CCUG---CUCGGGCGG--------CU-GA--AAGCG-CGCG- -5'
23774 5' -58.1 NC_005261.1 + 72716 0.66 0.8531
Target:  5'- cGuCGcGCCCGCCGcCccgUC-CGCGCg -3'
miRNA:   3'- cCuGCuCGGGCGGCuGaa-AGcGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 32214 0.66 0.8531
Target:  5'- cGACGAG-CUGCCGGC---CGCG-GCg -3'
miRNA:   3'- cCUGCUCgGGCGGCUGaaaGCGCgCG- -5'
23774 5' -58.1 NC_005261.1 + 118678 0.66 0.8531
Target:  5'- aGGGCG-GCgggCGCUGGCgcaCGCGCGg -3'
miRNA:   3'- -CCUGCuCGg--GCGGCUGaaaGCGCGCg -5'
23774 5' -58.1 NC_005261.1 + 53401 0.66 0.8531
Target:  5'- -cACGGGCCCGa--GCUcgUCuGCGCGCc -3'
miRNA:   3'- ccUGCUCGGGCggcUGAa-AG-CGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 106548 0.66 0.8531
Target:  5'- cGGCG-GCCgCGuCCgGGCcggCGCGCGCc -3'
miRNA:   3'- cCUGCuCGG-GC-GG-CUGaaaGCGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 29381 0.66 0.8531
Target:  5'- gGGAcugcccCGAGaUCCGCgaGGCggcCGCGCGCu -3'
miRNA:   3'- -CCU------GCUC-GGGCGg-CUGaaaGCGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 67278 0.66 0.8531
Target:  5'- cGGCcAGCagcagcccccCCGCCGcCg--CGCGCGCg -3'
miRNA:   3'- cCUGcUCG----------GGCGGCuGaaaGCGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 64146 0.66 0.8531
Target:  5'- -cGCGuccuGGCCCaGCCcGCgcaUCGCGUGCa -3'
miRNA:   3'- ccUGC----UCGGG-CGGcUGaa-AGCGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 40103 0.66 0.850793
Target:  5'- -cACGccAGCCCGCCGcacaccgacaccgaGCggUCGCccGCGCc -3'
miRNA:   3'- ccUGC--UCGGGCGGC--------------UGaaAGCG--CGCG- -5'
23774 5' -58.1 NC_005261.1 + 108923 0.66 0.848469
Target:  5'- gGGuCgGGGCCCagcacgcccacgcacGCCG-CguccUCGCGCGCg -3'
miRNA:   3'- -CCuG-CUCGGG---------------CGGCuGaa--AGCGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 49288 0.66 0.845345
Target:  5'- aGGCGcagaAGCCCG-CGGCggugagCGCcGCGCa -3'
miRNA:   3'- cCUGC----UCGGGCgGCUGaaa---GCG-CGCG- -5'
23774 5' -58.1 NC_005261.1 + 71084 0.66 0.845345
Target:  5'- gGGGCGuccgGGCCCGagaaGGCguacacgGCGCGCa -3'
miRNA:   3'- -CCUGC----UCGGGCgg--CUGaaag---CGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 103279 0.66 0.845345
Target:  5'- ----cAGCgCGCCGGgUgcCGCGCGCa -3'
miRNA:   3'- ccugcUCGgGCGGCUgAaaGCGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 104015 0.66 0.845345
Target:  5'- uGGCGcGCgCGCUGuACUgcgCGCcGCGCa -3'
miRNA:   3'- cCUGCuCGgGCGGC-UGAaa-GCG-CGCG- -5'
23774 5' -58.1 NC_005261.1 + 123167 0.66 0.845345
Target:  5'- gGGGCGGGCgCGCgggcguggUGGCUggUGUGgGCg -3'
miRNA:   3'- -CCUGCUCGgGCG--------GCUGAaaGCGCgCG- -5'
23774 5' -58.1 NC_005261.1 + 96327 0.66 0.845345
Target:  5'- uGACuGGCCUGgCG-CggcCGCGCGCa -3'
miRNA:   3'- cCUGcUCGGGCgGCuGaaaGCGCGCG- -5'
23774 5' -58.1 NC_005261.1 + 69441 0.66 0.845345
Target:  5'- aGACGGGCagCGCgGACgagcUGCgGCGCg -3'
miRNA:   3'- cCUGCUCGg-GCGgCUGaaa-GCG-CGCG- -5'
23774 5' -58.1 NC_005261.1 + 27700 0.66 0.845345
Target:  5'- gGGGgGAcGCUCGCCGGagcccUCGC-CGCg -3'
miRNA:   3'- -CCUgCU-CGGGCGGCUgaa--AGCGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.