miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 54638 0.66 0.732331
Target:  5'- -cCGCGuGAUGAGCGCGcCCGcGGUguuaaCGAa -3'
miRNA:   3'- uaGCGC-CUGUUCGCGC-GGCuCCA-----GCU- -5'
23775 3' -59.5 NC_005261.1 + 107264 0.66 0.760891
Target:  5'- -gCGCGGGCAcgggcgGGCGCGCaucAGG-CGGc -3'
miRNA:   3'- uaGCGCCUGU------UCGCGCGgc-UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 41885 0.66 0.760891
Target:  5'- gAUCGCGGcguACucGCGCaGCgUGGGGUUGGg -3'
miRNA:   3'- -UAGCGCC---UGuuCGCG-CG-GCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 5826 0.66 0.712856
Target:  5'- --gGCGGcCGAuGCGCGCCG-GGUUa- -3'
miRNA:   3'- uagCGCCuGUU-CGCGCGGCuCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 103428 0.66 0.760891
Target:  5'- -cCGCGGccacgcGCGcGCGCGCCucgcGGUCGGc -3'
miRNA:   3'- uaGCGCC------UGUuCGCGCGGcu--CCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 15839 0.66 0.711875
Target:  5'- -cCGCaucGCGAGCGCGCuagaggaCGAGGUCGc -3'
miRNA:   3'- uaGCGcc-UGUUCGCGCG-------GCUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 47114 0.66 0.760891
Target:  5'- -cCGUgaGGACGuGCGCGUCcAGGUCGu -3'
miRNA:   3'- uaGCG--CCUGUuCGCGCGGcUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 56319 0.66 0.759954
Target:  5'- -cUGCuacuGACGAgccuggcGCGCGCCGAGGcCGGg -3'
miRNA:   3'- uaGCGc---CUGUU-------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 67055 0.66 0.75147
Target:  5'- -cCGUGuaGGCGGGCGCGCgCGGGGgcucgcUCGGg -3'
miRNA:   3'- uaGCGC--CUGUUCGCGCG-GCUCC------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 110239 0.66 0.712856
Target:  5'- -gCGUGGGCGgcgcGGCGC-CCGGGGggcugCGGg -3'
miRNA:   3'- uaGCGCCUGU----UCGCGcGGCUCCa----GCU- -5'
23775 3' -59.5 NC_005261.1 + 60839 0.66 0.712856
Target:  5'- cAUCgGCGGcgGCGAggucGCGCGCCG-GGcCGAg -3'
miRNA:   3'- -UAG-CGCC--UGUU----CGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 75192 0.66 0.732331
Target:  5'- uGUCGCGGACcuucauGGCG-GCCGcGGUggCGGc -3'
miRNA:   3'- -UAGCGCCUGu-----UCGCgCGGCuCCA--GCU- -5'
23775 3' -59.5 NC_005261.1 + 53871 0.66 0.732331
Target:  5'- -gCGCGG-CGcGCGCGCUGucGaGUCGAa -3'
miRNA:   3'- uaGCGCCuGUuCGCGCGGCu-C-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 6225 0.66 0.732331
Target:  5'- cUgGCGGucCAGGUGCGCCcGGGGagGGc -3'
miRNA:   3'- uAgCGCCu-GUUCGCGCGG-CUCCagCU- -5'
23775 3' -59.5 NC_005261.1 + 118721 0.66 0.712856
Target:  5'- cGUCGCGGGCGGGCacgGCGUCGcGcUCGc -3'
miRNA:   3'- -UAGCGCCUGUUCG---CGCGGCuCcAGCu -5'
23775 3' -59.5 NC_005261.1 + 44251 0.66 0.731365
Target:  5'- -gCGCGGcCGacgccgcGGCGCGCgGGGGggCGGg -3'
miRNA:   3'- uaGCGCCuGU-------UCGCGCGgCUCCa-GCU- -5'
23775 3' -59.5 NC_005261.1 + 98307 0.67 0.703014
Target:  5'- cUCGgGGGCGGGCGCcGCCGccagcGG-CGGc -3'
miRNA:   3'- uAGCgCCUGUUCGCG-CGGCu----CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 14957 0.67 0.703014
Target:  5'- --aGCGaGCGGGCGUGCCuGGGG-CGAc -3'
miRNA:   3'- uagCGCcUGUUCGCGCGG-CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 70339 0.67 0.703014
Target:  5'- -aCGCGu-CGAGCGgGCCGGGGacCGGg -3'
miRNA:   3'- uaGCGCcuGUUCGCgCGGCUCCa-GCU- -5'
23775 3' -59.5 NC_005261.1 + 52249 0.67 0.702027
Target:  5'- uUCGUGGGaGGGCgcuguccGCGCCGGGGggCGGu -3'
miRNA:   3'- uAGCGCCUgUUCG-------CGCGGCUCCa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.