Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 46814 | 0.68 | 0.643045 |
Target: 5'- -gCGCGGAuggcgcgcgcCAGGCGCGCgugcucgggaaCGAGGUgGGc -3' miRNA: 3'- uaGCGCCU----------GUUCGCGCG-----------GCUCCAgCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 33800 | 0.68 | 0.647071 |
Target: 5'- -gCGCGGGCGgcgggcuugucuuugGGCG-GCCGGGGggcgCGGg -3' miRNA: 3'- uaGCGCCUGU---------------UCGCgCGGCUCCa---GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 83665 | 0.68 | 0.647071 |
Target: 5'- --gGCGGACGcgcgccugggcgcgcAGCGCGCCgccGAGG-CGGc -3' miRNA: 3'- uagCGCCUGU---------------UCGCGCGG---CUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 31320 | 0.68 | 0.622902 |
Target: 5'- -cCGCGGGCGcgcucgccgccAGCGCGCCGcugcGG-CGGc -3' miRNA: 3'- uaGCGCCUGU-----------UCGCGCGGCu---CCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 30354 | 0.68 | 0.621895 |
Target: 5'- cUCGCGGcccugaagGCcGGCGCGCCGggcgccgcggcgcGGGUgGAg -3' miRNA: 3'- uAGCGCC--------UGuUCGCGCGGC-------------UCCAgCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 1143 | 0.68 | 0.616862 |
Target: 5'- -aCGCGGACGAggagagcacuuccacGCGCGCCGGcccgcgccgcGGcCGGg -3' miRNA: 3'- uaGCGCCUGUU---------------CGCGCGGCU----------CCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 5572 | 0.68 | 0.592757 |
Target: 5'- --gGCGGAgaUggGgGCGCCGAGGgcgcccgccUCGAg -3' miRNA: 3'- uagCGCCU--GuuCgCGCGGCUCC---------AGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 82055 | 0.68 | 0.602787 |
Target: 5'- -gCGCGGGCca-CGuCGCCG-GGUCGAc -3' miRNA: 3'- uaGCGCCUGuucGC-GCGGCuCCAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 97407 | 0.68 | 0.602787 |
Target: 5'- -cCGCGGGCuuggcGGGCGCGCCG-GGcCu- -3' miRNA: 3'- uaGCGCCUG-----UUCGCGCGGCuCCaGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 31569 | 0.68 | 0.602787 |
Target: 5'- gGUCcUGGACGGGCGCGCCGGacgUGAg -3' miRNA: 3'- -UAGcGCCUGUUCGCGCGGCUccaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 57849 | 0.68 | 0.612838 |
Target: 5'- -gCGCGGGCGgcaaGGCcucgGCGCUcGGGUCGGg -3' miRNA: 3'- uaGCGCCUGU----UCG----CGCGGcUCCAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 69193 | 0.68 | 0.616862 |
Target: 5'- cGUCGCGGACGcggccaacgacGuccuccgggagcuguGCGCGCUGGGG-CGGu -3' miRNA: 3'- -UAGCGCCUGU-----------U---------------CGCGCGGCUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 12727 | 0.68 | 0.621895 |
Target: 5'- -gCGCGGGCccgccggcccccuGGGCGgGCCcggcGAGGUCGu -3' miRNA: 3'- uaGCGCCUG-------------UUCGCgCGG----CUCCAGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 3453 | 0.69 | 0.552982 |
Target: 5'- -gCGCGGGCcgcCGCGCCGcGcGUCGAg -3' miRNA: 3'- uaGCGCCUGuucGCGCGGCuC-CAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 30983 | 0.69 | 0.552982 |
Target: 5'- -cCGCGGcGCAAGCGCaagucgGCCGGGGcCa- -3' miRNA: 3'- uaGCGCC-UGUUCGCG------CGGCUCCaGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 82663 | 0.69 | 0.572788 |
Target: 5'- -gCGCGGAUGAGCGCcucgaGCCGcucGUCGGg -3' miRNA: 3'- uaGCGCCUGUUCGCG-----CGGCuc-CAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 23714 | 0.69 | 0.572788 |
Target: 5'- gGUCGgGuGGCAAGCggguggccGCGCCGAGG-CGc -3' miRNA: 3'- -UAGCgC-CUGUUCG--------CGCGGCUCCaGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 129604 | 0.69 | 0.572788 |
Target: 5'- -aCGCGG-CAAuuuCGCGgCGGGGUCGGg -3' miRNA: 3'- uaGCGCCuGUUc--GCGCgGCUCCAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74417 | 0.69 | 0.582756 |
Target: 5'- -cCGCGGGCGGGaGgGCCGAGGa--- -3' miRNA: 3'- uaGCGCCUGUUCgCgCGGCUCCagcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 108903 | 0.69 | 0.582756 |
Target: 5'- -cCGCcGGCGAGCgGgGCgCGGGGUCGGg -3' miRNA: 3'- uaGCGcCUGUUCG-CgCG-GCUCCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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