Results 81 - 100 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 3453 | 0.69 | 0.552982 |
Target: 5'- -gCGCGGGCcgcCGCGCCGcGcGUCGAg -3' miRNA: 3'- uaGCGCCUGuucGCGCGGCuC-CAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 30983 | 0.69 | 0.552982 |
Target: 5'- -cCGCGGcGCAAGCGCaagucgGCCGGGGcCa- -3' miRNA: 3'- uaGCGCC-UGUUCGCG------CGGCUCCaGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 82663 | 0.69 | 0.572788 |
Target: 5'- -gCGCGGAUGAGCGCcucgaGCCGcucGUCGGg -3' miRNA: 3'- uaGCGCCUGUUCGCG-----CGGCuc-CAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 129604 | 0.69 | 0.572788 |
Target: 5'- -aCGCGG-CAAuuuCGCGgCGGGGUCGGg -3' miRNA: 3'- uaGCGCCuGUUc--GCGCgGCUCCAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74417 | 0.69 | 0.582756 |
Target: 5'- -cCGCGGGCGGGaGgGCCGAGGa--- -3' miRNA: 3'- uaGCGCCUGUUCgCgCGGCUCCagcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 108903 | 0.69 | 0.582756 |
Target: 5'- -cCGCcGGCGAGCgGgGCgCGGGGUCGGg -3' miRNA: 3'- uaGCGcCUGUUCG-CgCG-GCUCCAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 101293 | 0.69 | 0.582756 |
Target: 5'- -cCGCGGucguCGAuGCGCGCCGuuagcGGGUgCGAg -3' miRNA: 3'- uaGCGCCu---GUU-CGCGCGGC-----UCCA-GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 43774 | 0.7 | 0.494991 |
Target: 5'- cUCGUGGGgcGGCGCGCgGAGGgcgccgCGGg -3' miRNA: 3'- uAGCGCCUguUCGCGCGgCUCCa-----GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 126940 | 0.7 | 0.494991 |
Target: 5'- -gCGCGGcCAGGgGCGCCGGGcG-CGGg -3' miRNA: 3'- uaGCGCCuGUUCgCGCGGCUC-CaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 72458 | 0.7 | 0.476267 |
Target: 5'- -cCGCGG-CGAGCGCGgCGAGcG-CGAg -3' miRNA: 3'- uaGCGCCuGUUCGCGCgGCUC-CaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 68561 | 0.7 | 0.476267 |
Target: 5'- -gCGCGGGCucuuuGAGCGCgucgccGCCGAGG-CGGg -3' miRNA: 3'- uaGCGCCUG-----UUCGCG------CGGCUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 131460 | 0.7 | 0.498776 |
Target: 5'- cUCGCGGGCGccucccgccuccgcgAGCGCGCCG---UCGAc -3' miRNA: 3'- uAGCGCCUGU---------------UCGCGCGGCuccAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 72873 | 0.7 | 0.503525 |
Target: 5'- -cCGCGGGCAGGUccgccccGcCGCCGGGGUaGAg -3' miRNA: 3'- uaGCGCCUGUUCG-------C-GCGGCUCCAgCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 119278 | 0.7 | 0.504478 |
Target: 5'- cUCGCuGGGCGGGgGCucGCCGAGGaagCGGa -3' miRNA: 3'- uAGCG-CCUGUUCgCG--CGGCUCCa--GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 132516 | 0.7 | 0.504478 |
Target: 5'- -aCGCGGGCugggacgaguacGAGCGCGCCcucgcgcgcGAGGgCGAg -3' miRNA: 3'- uaGCGCCUG------------UUCGCGCGG---------CUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 13493 | 0.7 | 0.504478 |
Target: 5'- -aUGCGGACGAGCGCGCa---GUCGc -3' miRNA: 3'- uaGCGCCUGUUCGCGCGgcucCAGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 57792 | 0.7 | 0.523679 |
Target: 5'- cGUCGCGcGGCGGGCGCGCgaAGGcCGu -3' miRNA: 3'- -UAGCGC-CUGUUCGCGCGgcUCCaGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 115991 | 0.7 | 0.523679 |
Target: 5'- cGUCGCuGACGAGC-CGCCcGAGG-CGGc -3' miRNA: 3'- -UAGCGcCUGUUCGcGCGG-CUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 133833 | 0.71 | 0.467038 |
Target: 5'- -gCGCGGccGCGuGCGCGCCGuGGcCGGc -3' miRNA: 3'- uaGCGCC--UGUuCGCGCGGCuCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74029 | 0.71 | 0.457902 |
Target: 5'- -aCGCccagcaagauGGACcAGCGCGCCGGGGggcugCGGc -3' miRNA: 3'- uaGCG----------CCUGuUCGCGCGGCUCCa----GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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