miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 74740 0.8 0.138494
Target:  5'- -cCGCGGACAaccugcuggcgcggcAGCGCGCCacaggcgcgGAGGUCGAc -3'
miRNA:   3'- uaGCGCCUGU---------------UCGCGCGG---------CUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 89177 0.76 0.221821
Target:  5'- -cCGCGGACAAccuggagccgcucgcGgGCGCCGAGGcCGAc -3'
miRNA:   3'- uaGCGCCUGUU---------------CgCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 46232 0.76 0.225047
Target:  5'- -gCGUGGACGAGCGCGUCGcAGGcCGc -3'
miRNA:   3'- uaGCGCCUGUUCGCGCGGC-UCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 90233 0.76 0.236089
Target:  5'- --gGCGGGCGGGCGCGCCGucGGGUa-- -3'
miRNA:   3'- uagCGCCUGUUCGCGCGGC--UCCAgcu -5'
23775 3' -59.5 NC_005261.1 + 102763 0.76 0.236089
Target:  5'- -cCGCGGACGcgAGCGCGCCcGAGGccUCGc -3'
miRNA:   3'- uaGCGCCUGU--UCGCGCGG-CUCC--AGCu -5'
23775 3' -59.5 NC_005261.1 + 23162 0.75 0.265683
Target:  5'- --aGUGGgcccgGCAGGCGCGCCGGGGgCGAc -3'
miRNA:   3'- uagCGCC-----UGUUCGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 48333 0.75 0.278337
Target:  5'- cUCGgGGGCGcGCGCGgCGAGGcCGAg -3'
miRNA:   3'- uAGCgCCUGUuCGCGCgGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 17469 0.74 0.284841
Target:  5'- -cUGCGGGCAgacgcgGGCGCGCCGGGGg--- -3'
miRNA:   3'- uaGCGCCUGU------UCGCGCGGCUCCagcu -5'
23775 3' -59.5 NC_005261.1 + 82286 0.74 0.29753
Target:  5'- gGUCGCGGAUGcAGCGC-CCGAGGcuguccaUCGAg -3'
miRNA:   3'- -UAGCGCCUGU-UCGCGcGGCUCC-------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 74949 0.74 0.305075
Target:  5'- -gCGCGGGCGcgcucGGCGCGCuCGAGGcCGc -3'
miRNA:   3'- uaGCGCCUGU-----UCGCGCG-GCUCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 17124 0.74 0.305075
Target:  5'- uAUCGCGGcgGCGGGUaCGCCGgcGGGUCGAc -3'
miRNA:   3'- -UAGCGCC--UGUUCGcGCGGC--UCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 63368 0.74 0.31206
Target:  5'- -gCGCGGuGCGGGUGUGCCG-GGUCGc -3'
miRNA:   3'- uaGCGCC-UGUUCGCGCGGCuCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 136614 0.74 0.31206
Target:  5'- --aGCGGcGCGcGCGCGCCGAGGgcggCGGg -3'
miRNA:   3'- uagCGCC-UGUuCGCGCGGCUCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 69450 0.74 0.317735
Target:  5'- -gCGCGGACGagcugcGGCGCGUCGAGGgccacauccgcgCGAu -3'
miRNA:   3'- uaGCGCCUGU------UCGCGCGGCUCCa-----------GCU- -5'
23775 3' -59.5 NC_005261.1 + 58273 0.74 0.319166
Target:  5'- cUCGCcgcgcucacgGGGCcGGCGCGCCGGGGggcgCGGg -3'
miRNA:   3'- uAGCG----------CCUGuUCGCGCGGCUCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 21699 0.73 0.326393
Target:  5'- cGUCGCGGGCGAGCGCuucaCgGAGGacugcuUCGAg -3'
miRNA:   3'- -UAGCGCCUGUUCGCGc---GgCUCC------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 83383 0.73 0.333
Target:  5'- -gCGCGG-CGAGCGCggccucgGCCGAGG-CGAg -3'
miRNA:   3'- uaGCGCCuGUUCGCG-------CGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 99796 0.73 0.341208
Target:  5'- aGUCGCGGcGCGgauggcgaacAGCGCGCCGuccgccGGGUCGu -3'
miRNA:   3'- -UAGCGCC-UGU----------UCGCGCGGC------UCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 111698 0.73 0.363542
Target:  5'- uGUCGUGGACcgcaugaAGGCGCaGUCGcGGGUCGAc -3'
miRNA:   3'- -UAGCGCCUG-------UUCGCG-CGGC-UCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 109883 0.72 0.372274
Target:  5'- -cCGCGGGCGGGCGCcCCGGGG-Cu- -3'
miRNA:   3'- uaGCGCCUGUUCGCGcGGCUCCaGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.