miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 69193 0.68 0.616862
Target:  5'- cGUCGCGGACGcggccaacgacGuccuccgggagcuguGCGCGCUGGGG-CGGu -3'
miRNA:   3'- -UAGCGCCUGU-----------U---------------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 1143 0.68 0.616862
Target:  5'- -aCGCGGACGAggagagcacuuccacGCGCGCCGGcccgcgccgcGGcCGGg -3'
miRNA:   3'- uaGCGCCUGUU---------------CGCGCGGCU----------CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 12727 0.68 0.621895
Target:  5'- -gCGCGGGCccgccggcccccuGGGCGgGCCcggcGAGGUCGu -3'
miRNA:   3'- uaGCGCCUG-------------UUCGCgCGG----CUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 30354 0.68 0.621895
Target:  5'- cUCGCGGcccugaagGCcGGCGCGCCGggcgccgcggcgcGGGUgGAg -3'
miRNA:   3'- uAGCGCC--------UGuUCGCGCGGC-------------UCCAgCU- -5'
23775 3' -59.5 NC_005261.1 + 107351 0.68 0.622902
Target:  5'- cGUUGCGGACcuGCgucgucguggGCGCCGGGG-CGc -3'
miRNA:   3'- -UAGCGCCUGuuCG----------CGCGGCUCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 96996 0.68 0.622902
Target:  5'- -gCGCGGcUAAGCGCGCCauuGGG-CGGg -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGc--UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 31320 0.68 0.622902
Target:  5'- -cCGCGGGCGcgcucgccgccAGCGCGCCGcugcGG-CGGc -3'
miRNA:   3'- uaGCGCCUGU-----------UCGCGCGGCu---CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 104171 0.68 0.632974
Target:  5'- -cCGCGGGCGccGCGCGC--GGGUCGu -3'
miRNA:   3'- uaGCGCCUGUu-CGCGCGgcUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 132054 0.68 0.632974
Target:  5'- -cCGgGGAgguGGCG-GCCGAGGUCGc -3'
miRNA:   3'- uaGCgCCUgu-UCGCgCGGCUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 46814 0.68 0.643045
Target:  5'- -gCGCGGAuggcgcgcgcCAGGCGCGCgugcucgggaaCGAGGUgGGc -3'
miRNA:   3'- uaGCGCCU----------GUUCGCGCG-----------GCUCCAgCU- -5'
23775 3' -59.5 NC_005261.1 + 83665 0.68 0.647071
Target:  5'- --gGCGGACGcgcgccugggcgcgcAGCGCGCCgccGAGG-CGGc -3'
miRNA:   3'- uagCGCCUGU---------------UCGCGCGG---CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 33800 0.68 0.647071
Target:  5'- -gCGCGGGCGgcgggcuugucuuugGGCG-GCCGGGGggcgCGGg -3'
miRNA:   3'- uaGCGCCUGU---------------UCGCgCGGCUCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 11475 0.67 0.653107
Target:  5'- -gCGCGGAgGGGCGgGgCGGGGgugccggcUCGAg -3'
miRNA:   3'- uaGCGCCUgUUCGCgCgGCUCC--------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 35464 0.67 0.653107
Target:  5'- -gCGCGGcGCGcGCGCGucCCGGGGUCc- -3'
miRNA:   3'- uaGCGCC-UGUuCGCGC--GGCUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 21485 0.67 0.663154
Target:  5'- uUC-CGGACGAGUGCuaCGAGGaUGAg -3'
miRNA:   3'- uAGcGCCUGUUCGCGcgGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 65590 0.67 0.673176
Target:  5'- -cCGCGaGCuccuGCuCGCCGGGGUCGGc -3'
miRNA:   3'- uaGCGCcUGuu--CGcGCGGCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 43388 0.67 0.673176
Target:  5'- cUCGCGGuGCcGGCaccguccagGCGCCGGGGgCGGc -3'
miRNA:   3'- uAGCGCC-UGuUCG---------CGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 132594 0.67 0.677176
Target:  5'- -cCGCGGACGcccggcccggcgAGCcgccagggggcgcugGCGCCGAGGacgCGGg -3'
miRNA:   3'- uaGCGCCUGU------------UCG---------------CGCGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 59658 0.67 0.683166
Target:  5'- --gGCGGGCGAcuGCG-GCCGGGucGUCGAa -3'
miRNA:   3'- uagCGCCUGUU--CGCgCGGCUC--CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 68138 0.67 0.683166
Target:  5'- -gCGCGG-CGAcCGCGCCGuGGcCGGc -3'
miRNA:   3'- uaGCGCCuGUUcGCGCGGCuCCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.