miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 68138 0.67 0.683166
Target:  5'- -gCGCGG-CGAcCGCGCCGuGGcCGGc -3'
miRNA:   3'- uaGCGCCuGUUcGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 59658 0.67 0.683166
Target:  5'- --gGCGGGCGAcuGCG-GCCGGGucGUCGAa -3'
miRNA:   3'- uagCGCCUGUU--CGCgCGGCUC--CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 48441 0.67 0.683166
Target:  5'- cUCGCGGuGCGuGGCGCGgCCGGcgcGGUCa- -3'
miRNA:   3'- uAGCGCC-UGU-UCGCGC-GGCU---CCAGcu -5'
23775 3' -59.5 NC_005261.1 + 30791 0.67 0.693114
Target:  5'- --gGCGGugGAG-GUGCUGGGGcCGGa -3'
miRNA:   3'- uagCGCCugUUCgCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 63023 0.67 0.693114
Target:  5'- -gCGCGGGCGccGGCGC-CCGcGG-CGAg -3'
miRNA:   3'- uaGCGCCUGU--UCGCGcGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 94547 0.67 0.693114
Target:  5'- uUCGCcuuCAGGaGCGCCG-GGUCGAa -3'
miRNA:   3'- uAGCGccuGUUCgCGCGGCuCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 88474 0.67 0.693114
Target:  5'- --gGCGGGCcgugccgcgccgGAGCGCGCCGcGcUCGAc -3'
miRNA:   3'- uagCGCCUG------------UUCGCGCGGCuCcAGCU- -5'
23775 3' -59.5 NC_005261.1 + 92606 0.67 0.693114
Target:  5'- cUCGCGGc---GCGUGCCGGGGcccCGGg -3'
miRNA:   3'- uAGCGCCuguuCGCGCGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 52249 0.67 0.702027
Target:  5'- uUCGUGGGaGGGCgcuguccGCGCCGGGGggCGGu -3'
miRNA:   3'- uAGCGCCUgUUCG-------CGCGGCUCCa-GCU- -5'
23775 3' -59.5 NC_005261.1 + 14957 0.67 0.703014
Target:  5'- --aGCGaGCGGGCGUGCCuGGGG-CGAc -3'
miRNA:   3'- uagCGCcUGUUCGCGCGG-CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 70339 0.67 0.703014
Target:  5'- -aCGCGu-CGAGCGgGCCGGGGacCGGg -3'
miRNA:   3'- uaGCGCcuGUUCGCgCGGCUCCa-GCU- -5'
23775 3' -59.5 NC_005261.1 + 98307 0.67 0.703014
Target:  5'- cUCGgGGGCGGGCGCcGCCGccagcGG-CGGc -3'
miRNA:   3'- uAGCgCCUGUUCGCG-CGGCu----CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 15839 0.66 0.711875
Target:  5'- -cCGCaucGCGAGCGCGCuagaggaCGAGGUCGc -3'
miRNA:   3'- uaGCGcc-UGUUCGCGCG-------GCUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 118721 0.66 0.712856
Target:  5'- cGUCGCGGGCGGGCacgGCGUCGcGcUCGc -3'
miRNA:   3'- -UAGCGCCUGUUCG---CGCGGCuCcAGCu -5'
23775 3' -59.5 NC_005261.1 + 110239 0.66 0.712856
Target:  5'- -gCGUGGGCGgcgcGGCGC-CCGGGGggcugCGGg -3'
miRNA:   3'- uaGCGCCUGU----UCGCGcGGCUCCa----GCU- -5'
23775 3' -59.5 NC_005261.1 + 60839 0.66 0.712856
Target:  5'- cAUCgGCGGcgGCGAggucGCGCGCCG-GGcCGAg -3'
miRNA:   3'- -UAG-CGCC--UGUU----CGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 5826 0.66 0.712856
Target:  5'- --gGCGGcCGAuGCGCGCCG-GGUUa- -3'
miRNA:   3'- uagCGCCuGUU-CGCGCGGCuCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 30162 0.66 0.721657
Target:  5'- --aGCGGcgccgcgcccgccGCGcuGCGCGCCGAGG-CGGc -3'
miRNA:   3'- uagCGCC-------------UGUu-CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 80884 0.66 0.722631
Target:  5'- -gCGCGGGCuucAGCgGCGCCucccaGGGGUCc- -3'
miRNA:   3'- uaGCGCCUGu--UCG-CGCGG-----CUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 100041 0.66 0.722631
Target:  5'- -cCGCGGGCGucagcucgAGCGCGCCGccGcCGc -3'
miRNA:   3'- uaGCGCCUGU--------UCGCGCGGCucCaGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.